KEGG   Oryza sativa japonica (Japanese rice): 4336704
Entry
4336704           CDS       T01015                                 
Symbol
OsRFC4, RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4336704 (OsRFC4)
   03410 Base excision repair
    4336704 (OsRFC4)
   03420 Nucleotide excision repair
    4336704 (OsRFC4)
   03430 Mismatch repair
    4336704 (OsRFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4336704 (OsRFC4)
   03036 Chromosome and associated proteins [BR:osa03036]
    4336704 (OsRFC4)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4336704 (OsRFC4)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4336704 (OsRFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4336704 (OsRFC4)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4336704 (OsRFC4)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4336704 (OsRFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4336704 (OsRFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Rad17 AAA_16 Viral_helicase1 Mg_chelatase AAA_5 RCF1-5-like_lid AAA_11 nSTAND3 AAA_24 AAA_assoc_2 AAA_25 AAA_19 AAA_28 RuvB_N RNA_helicase MeaB AAA_30 AAA_3 DNAX_ATPase_lid T2SSE ABC_tran SLFN-g3_helicase bpMoxR NTPase_1 DUF6120 IstB_IS21 KTI12 DNA_pol3_gamma3 AAA_18 DNA_pol3_delta_C MCM
Other DBs
NCBI-GeneID: 4336704
NCBI-ProteinID: NP_001406737
LinkDB
Position
4:join(29103391..29103558,29103668..29103774,29103886..29103987,29104535..29104730,29105440..29105568,29105645..29105839,29105931..29106041)
AA seq 335 aa
MDASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQVIARDGNMPNLILSGPPG
TGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVI
LDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL
GRLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPH
PLHVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKE
TGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggccgcctccagctcctccgcccccgccctcgccgacgcctacgacatcccgtgggtg
gagaagtaccgccccacccgcgtcgccgacgtcgtcggcaactccgacgccgtcgcccgc
ctccaggtcatcgcccgcgacggcaacatgccaaacctaatcctctccgggcctccgggc
accgggaagactacgagcatcctgtcgctggcacacgagctgctcggacctagctaccgc
gaggccgtgctcgagctcaatgcctcggacgacaggggcctggatgtggtgcggaacaag
atcaagatgtttgcgcagaagaaggtcacgctgcagccggggaggcacaagatcgtcatc
ttggatgaggctgacagcatgacatcgggagcacagcaagcactgagacgaacaatggag
atttattctaacaccacaaggtttgcgcttgcatgcaacacttcatctaagatcattgaa
cccattcaaagccgttgtgctattgtacggttctcaaggctttcagatcaggagattctt
ggccgactcatgattgtggtagcagctgagaaggttccttacgtgccagagggacttgaa
gctatcatctttactgctgatggtgacatgaggcaagctttgaacaacttgcaagctaca
gttagtgggttccgttttgttaatcaagaaaatgtgttcaaggtgtgtgatcaaccacat
ccgttgcatgtcaagaatatggtgaaaaatgtgcttgatggaaagtttgatgaggcttgc
tctgctctgaagcaattatatgatttgggctactctcccactgacataatcactactctc
ttccgggttatcaagaactacgacatggctgaatatctgaagctggaattgttgaaggaa
accggatttgctcacatgagaatctgcgatggtgttggctcatttcttcaattatcaggc
cttctggcaaagtttgcgttggtgagagaaacagcaaaagcatcatga

KEGG   Oryza sativa japonica (Japanese rice): 4351654
Entry
4351654           CDS       T01015                                 
Symbol
OsJ_35406, OsRFC2, RFC2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4351654 (OsJ_35406)
   03410 Base excision repair
    4351654 (OsJ_35406)
   03420 Nucleotide excision repair
    4351654 (OsJ_35406)
   03430 Mismatch repair
    4351654 (OsJ_35406)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4351654 (OsJ_35406)
   03036 Chromosome and associated proteins [BR:osa03036]
    4351654 (OsJ_35406)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4351654 (OsJ_35406)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4351654 (OsJ_35406)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4351654 (OsJ_35406)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4351654 (OsJ_35406)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4351654 (OsJ_35406)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4351654 (OsJ_35406)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_22 RuvB_N Mg_chelatase AAA_assoc_2 AAA_14 AAA_11 AAA_5 AAA_16 AAA_24 ResIII SLFN-g3_helicase AAA_2 nSTAND3 PhoH DNAX_ATPase_lid AAA_25 AAA_30 AAA_19 AAA_23 IstB_IS21 AAA_7 AAA_28 RNA_helicase bpMoxR Cdc6_lid DUF3853 Parvo_NS1
Other DBs
NCBI-GeneID: 4351654
NCBI-ProteinID: NP_001410281
LinkDB
Position
12:join(3902563..3902606,3902731..3902809,3902903..3902982,3903956..3904075,3904158..3904227,3904306..3904379,3904461..3904581,3904668..3904730,3904816..3904875,3905224..3905349,3905426..3905509,3905980..3906078)
AA seq 339 aa
MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN
RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIP
EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK
KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggtg
aaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgcc
gaccttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgctt
gccattgcttaccagctctacggtccagagctctacaagtcaagagttctagaacttaat
gctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgtt
gctgttggttctgcacgaaaaggcggttatccctgcccaccatacaagattattatacta
gatgaagcagattcgatgacagaagatgcccagaatgctttaaggcgtactatggagact
tactccaaagtgacaagattctttttcatatgcaattacatcagcaggataatagaacca
cttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaat
cgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggcattggctaca
ctaagcaccatctctaatggtgacctccgccgtgctataacctatcttcagagcgctgct
cgcttatttggatcttctatttcttctactgacttgattagtgtttcaggggctatccct
gaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaac
aaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacagttt
ctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaa
aagcttggggaagcagataagtgcttggtcgatggagcggatgagtatttacagcttttg
gatgtggctagtgagactatccgtgctctttttgacatgccacaaacgctggtcttctaa

DBGET integrated database retrieval system