KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4336722
Entry
4336722           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4336722
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4336722
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4336722
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     4336722
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_7 Zn_ribbon_2
Other DBs
NCBI-GeneID: 4336722
NCBI-ProteinID: XP_015637038
LinkDB
Position
4:28833236..28846888
AA seq 1473 aa
MCLLFRMEEPSLEVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAP
QCATCGSRSIRDCDGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADG
TTIQGTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAH
KSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQVTRRRE
LLFLSCLPVTPNCHRVAEMPYGHLDGPRLAFDDRTKAYKRMVDVSRRIDDYHQHPQFGVF
ASSVVTSRVMECLKSSKLYSKKSDDESSASTDTYGTKWLKDIILSKRSDNAFRSIMVGDP
KINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKAN
QLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFD
GDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEK
AEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSE
VLTCSSGSFWLQNNTSSLFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLF
SDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQV
SLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLP
ASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLH
AISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSD
HDLEGEPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGL
LFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNPWITHFHL
NQETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGNECVKNQTCCVTM
VVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSG
KFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHR
QHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDN
LSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYR
KRTEKTSKRRSALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLN
EVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSY
NKCVLGAANSISPELGSYIENRRSNRAVRPHQL
NT seq 4422 nt   +upstreamnt  +downstreamnt
atgtgtttgttgttcaggatggaggagccaagtcttgaggtgaataatcctgtggctgag
ctgaatgccatcaaattcagcctcatgaccagttcagatatggaaaagttaagtagtgcg
actattattgaaatgtgtgatgtgactaacgccaagttgggattaccaaatggtgcacca
cagtgtgcaacctgtggatcgcgaagcatacgtgactgtgatggtcattttggtgttatt
aagctagcagcaactgtgcacaattcatattttatcgaggaagttgtccagttgctaaat
cagatatgtcctggctgtctcactctgaagcaaaatggggacacaaagaaggctgatggg
acaacaattcaaggaacttgcaagtattgctcaaaggatggatcaaaactttaccctagt
ataatctttaagatgctaacaagtccaagagtaacactatccaggagtaaacttcaccgt
aacactagcgtgatggacaaaatgtcaattattgcagaagttgctggcggggtggcacat
aagtccaagaacaaggctccccatgaaacccttccccaagatttctgggatttcatacct
gatgataaccagccacctatattcaatgtgactaagaaaatattgtcgccatatcaagtc
tttcacatgctaaaaaagcttgatcctgaacttatcaatcaggttactcgaaggcgggag
ctattgttcctgtcatgtttgccagtgactcctaactgtcatcgtgttgcggagatgcca
tatggacatttagatggcccccgattagcttttgatgaccggacaaaagcttataagagg
atggttgatgtgagtaggagaattgatgattaccatcagcatccgcagttcggcgttttt
gcaagttcagttgtcacaagtcgtgttatggagtgcttgaaatcatccaagttatactca
aaaaaatcagatgatgaatcttctgcatctacagatacatatggaaccaaatggctaaaa
gatatcatcctcagcaaaagatccgacaatgcatttaggagtataatggtcggggaccca
aaaattaatttaaatgaaatcggtattcctatgggtttagctttgaacttggttgtttct
gagcaagttagttcttacaatttcgaaaccataaatttgaagtgcaacttgcaccttctt
accaaggaagtactgcttgtccgccgaaatgggaatcttatttttgttcggaaggcaaac
cagttagaaattggtgatattgcttatagactattgcaggatggtgatcttgttttggta
aataggccaccttcagttcatcaacattctctgattgccctatctgcaaaacttctgtca
actcagtcagctgtgtcaattaatccactatgttgtgatcctttcaagggagactttgat
ggggactgtttgcatggatatattcctcaatgtctgcaatcaagaattgagcttgaagaa
ctagttggtttaagtggccaactcttgaatcaacaagatgggcgaagtttggtgtcatta
acacatgactctctagctgctgcacatcagttaacaaatgcagatgttttcttggagaaa
gctgaatttcaacagcttcagatgttatcctcttccatctcattgacaccaatgccatca
gtttttaaatctacaaactctcaaggtcctctttggactggtaagcaactgtttggaatg
ctgctaccttatggtatgaatatcagttttgatcagaagttacacataaaagacagtgaa
gtgcttacctgctcatcaggatctttttggttacagaataacacatccagccttttctct
gtcatgttcaaagagtatggttgtaaggctcttgagttcctttcttccacccaggatgta
ctatgtgaattcttaaccatgtggggtttaagtgtctccctttcagatctctatctgttc
tcagaccattactcaaggagaaaactgagtgaggaagttcatctggcattggatgaagcg
gaagaggcttttcaaatcaagcaaatattgctaaattcagtatctataccaaatctgaag
tattatgatggaggtgatgatagatcaaacactgatgaacaatctggttttactcaagtc
agtctgccaatcatcagatcttcaatgacatcatttaagagtgtcttcaatgatctgttg
aagatggtgcagcagtatgtgagtaaagataattcaatgatgacaatgattaactctgga
agtaaaggtagtgttctgaagtttgttcaacagactgcatgtgttggtcttcaactacca
gcaagtaaatttccctttagaattccctcacaactatcatgtgtttcctggaatagacat
aaatctctcaattgtgaaatcactgacggcaccagtgaatgtgtgggaggccaagacatg
tatgctgttgttagaaattcttttcttgatggactaaatccgttagaatgtctactgcat
gccatatctggcagggcaaatttctttagcgaaaatgctgacgttcctgggactttgaca
aggaaactaatgtatcacttgagagatacatacgttgcttatgatgggactgttagaagt
tcttatgggcagcaaatagtgcggttttcttatgatactgctgatggcatgtacagtgat
catgatcttgaaggtgaacctggggcccctgttggctcttgggctgcttgttccatttca
gaagctgcctatggagctttggatcacccagttaacagtttagaggattcccctcttatg
aacttgcaggaagttttgaagtgccacaagggcacaaattctctggatcatactggtttg
cttttcctgtcaaagcatctaaggaaatatagatatggttttgagtatgcatcactagaa
gttaaggatcatctagaacgagtggacttttctgatatggttgacacggtcattatttta
tatggcggctcagatatgcagaaaacaaaaggaaatccttggatcactcattttcattta
aaccaggaaacaatgaagataaaaaggttaggactggaatttattgtaagagagattatt
gaccaatacaacaccttaagaaaacagttgaacaatgcgatcccttcagtttctatttcg
aacagcaaatgttctgtaggcaatgagtgtgtcaagaatcagacctgttgcgtcactatg
gtagtacaggtggaaattaactccatgtcgcaattggacgttatcaaggaacgggtgatt
ccaagcatcctggccacactgttgaaaggatttttggaatttaagaatgttaaggtgcaa
tgtcaagaggataatgaacttgttctgaaagtcggtatgtctgagcattgcaagagtggg
aagttctgggctaccctacaaaatgcttgcatcccaataatggagttgattgattgggag
cggagccgaccagagagagtatatgataatttctgctcatatggcatagactcagcatgg
aaattctttgtcgaatctttaagatccacaacagatgctattggaaggaatatccatcga
cagcacttactggttgtggcagactgcctatctgtgagtgggcagttccatgggctaagc
agtcaaggtttaaagcagcaaaggacttggttatcaatctcctctccattttctgaagca
tgcttttctaggcctgcacacagttttataaatgctgcaaagcgagattcagtggacaat
ctttctggtactctagatgcaattgcctggggcaaagaaccttgtgcagggtcgtcaggt
cctttcaagattctatattctgggaagtcacatgagacaaaacaaaatgagcacatatat
gactttctacataaccctgaagttcaggctcttgaaaagaatgtaatggatacctacaga
aaaaggactgaaaaaacttccaagcggagatcagcactcaattctgaaggcaatgctacc
atcaatggtggtgccatatcttttaatcagaagtttcttaatgctaaagttggtatatgg
gagaacatcattgacatgcgcacttccttgcaaaacatgcttcgggagtacacattaaat
gaagttgtcacagaacaagataaatcatgcttaatggaggccttgaaatttcatcccaga
gggtatgacaagattggtgtgggaataagagaaatcaagatcggagtgaatcctggtcac
ccgagctcaaggtgcttcattgtactaaggaatgatgatactactgcagacttctcttac
aacaagtgtgtccttggtgctgcaaattctatctcacctgaacttggaagttatatagag
aacagacgatctaatagagcagttcggccacatcagttgtag

KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4347810
Entry
4347810           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4347810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4347810
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4347810
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     4347810
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 4347810
NCBI-ProteinID: XP_015611692
LinkDB
Position
9:22018348..22032735
AA seq 1467 aa
MEEPSLEVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCG
SQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTKKTDGTTIQTT
CKYCSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHNSKNKA
PHETLPQDFWDFVPDDNQPPQSNVAKKILSPYQVFHMLKNLDPELINQVTPRRELLFLSC
LPVTPNCHRVAEMQYGHSDGPRLAFDDRTKAYKRMVDVSKRIDDCRQHPQFSVFASSVVT
SRVMECLKSSKLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNE
IGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLTKEVLLVRRNGKLIFVRKANKLEIGD
IAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHG
YVPQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQL
QLLCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPSGMNISFDQKLHIKDSEVLTCSS
GSFWLQNNTSSVFSVMFKEYGSKALEFLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSR
KKLSEEIHLALDEAEEAFQIKQILLNTVSIPNLKHYDGPDNLSNSHGQSDFTQVSLPIIK
SSITGFKSVFNDLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPF
RIPSELSCVSWNRQKSLNCEITNNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRA
NFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGE
PGAPVGSWAACSISEAAYGALDHPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKY
LKKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGSSDMQRTQGNPWITHFHLSEETMK
IKRLRLGFIVRELIDQYNALRKKLNNMIPSVCISYSKCSVGNECVKNRSCCVTMVAQVES
NSTSQLDIIKERVIPSILATLLKGFLEFENVKVECQQDSELVVKVGMSEHCKTGKFWATL
QNACIPIMELIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVV
ADCLSISGQFHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALD
AIAWGKEPCAGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMDTYKQRTEKP
SKQRSAFSSKGNATINGGTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYTLNEVVTEQ
DKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLG
AANSISPELGSYIEKILSNRAIRPHQL
NT seq 4404 nt   +upstreamnt  +downstreamnt
atggaggagccaagtcttgaggtgaaaatgcctgaagctgatctgaaggccgtcaaattc
agcctcatgaccagttcagacatggaaaagttaagtagtgcgagtattattgaaatgtgt
gatgtgactaatgccaagttgggattaccaaatggtgcaccacagtgtgcaacctgtgga
tcgcaaagcgtacgtgactgtgatggtcatttcggtgttattaagctggcagcaaccgtg
cataatccatgttttattgaggaagttgtccagttgctgaatcagatatgtccaggctgt
ctcactctgaagcaaaatggggacacaaagaagactgatgggacaacaattcagacaact
tgcaagtattgctcaaaggatggagcaaaactttaccctagtgtaatctttaagatgcta
acaagtccaagagtaacactatccaggagtaaacttcaccgtaacactagtgtgatggac
aaaatttcaattatcgcagaagttgctggtggggtgacacataattccaagaacaaagct
ccccatgaaacccttccccaagatttctgggatttcgtacctgatgataaccaaccacct
caatccaatgtggctaagaaaatattgtcaccataccaagtctttcacatgctaaaaaac
cttgaccctgaacttatcaatcaggttactccaaggcgggaactattgttcctgtcatgt
ttgccagtgactcctaactgtcatcgtgttgcagagatgcaatatggacattcagatggc
ccccggttagcttttgatgaccggacaaaagcatataagaggatggttgatgttagtaag
agaattgatgattgtcgccagcatccacagttcagtgtttttgcaagttcagttgtcaca
agccgcgttatggagtgcttgaaatcatccaagttatactcaagaaagtcagatggtgaa
gaccctacatctccagatacatatggaaccaaatggctaaaagacatcattctcagcaaa
agatccgacaatgcatttaggagtataatggttggggatccaaaaattaatttaaatgaa
atcggtattcctacggatttagctttgaacttggttgtttctgagcaagttagtttttac
aactttgaaaccataaatttaaagtgcaacttgcaccttcttaccaaggaagtactgctt
gtccgtcgaaatgggaagcttatttttgttcggaaggcaaacaagctggaaattggtgat
attgcctatagactattgcaggatggtgatcttgttcttgtaaataggccgccttcagtt
catcaacattctctcattgccctatctgcaaagcttctgccaattcaatctgctgtggca
atcaaccctctgtgctgtgaccctttcaaaggagactttgatggggactgtttgcatgga
tatgtaccccaaaccctgcaatcaagagttgagcttgatgggctagttagtttaagcggc
caaatgttaaatgctcaagatgggcgaagtttggtgtcattaacacatgactccctagct
gctgcacatcagttaacaagtgcagatgttttcttgcagaaagctgaatttcaacaactt
caattgttatgctcttctatctcaccgacaccagagccatcagtagttaaatctgcaaac
tttcaaggttctctttggactggtaagcaactatttggtatgctgctaccttctggtatg
aatatcagttttgatcagaagctacacatcaaagacagtgaagtgcttacctgctcatca
ggatctttttggctacagaacaacacatctagtgttttttctgtcatgttcaaagagtat
ggtagtaaggctcttgagttcctttcttccacccaagatgtactatgtgaattcttaacc
atgaagggtttaagtgtttccctgtcagatttctatctattctcagatcattactcaagg
aaaaaactaagtgaggaaattcatcttgcattggatgaagcggaagaagcttttcaaatc
aagcaaatattgctaaatacagtttcgataccaaatctgaagcattatgatggacctgat
aatctatcaaactctcatggacaatctgattttactcaggtcagtctgcccatcattaaa
tcttcaatcacaggatttaagagtgtcttcaatgatctgttgaagatggtacttcaacat
gtgagtaaagataattcaatgatggcaatgattaactctgggagtaaaggtagtgttctg
aagtttgtccagcaaactgcatgtgttggtcttcaacttccagcgagtacatttcccttc
agaattccttcggaactatcatgtgtttcctggaatagacaaaaatctctcaattgtgaa
atcaccaacaacacaagtgaatgtatggcaggccaaaacatgtatgctgtgatcagaaat
tcttttcttgatggactaaatccgttagaatgtctactacatgctatatctggcagggca
aatttctttagcgaaaatgctgatgttcctgggacattgacgaggaaactaatgtatcac
ctgagagatacatatgttgcttatgatgggactgttagaagttcttatgggcggcaaata
gttcagttttcttatgatactgctgatggcatgaacaatgatcatgatcttgaaggtgaa
cctggtgcccctgttggctcttgggccgcttgttccatttcagaagctgcatatggagct
ttggatcacccagttaatgctttagaggattcccctcttatgaacttgcaggaagttttg
aagtgccataagggtacaaaatctgcagttcatactggtttgcttttcctatcgaagtat
ctaaagaagtatagatatggttttgagtatgcatcgctagaagttaaggatcatctagag
cgagtggacttctctgatttggttgacacggttatgattttatatggcagctctgatatg
cagagaacacaaggaaatccatggatcactcatttccatttaagcgaggaaacaatgaag
ataaaaaggttacgactgggatttattgtaagagagctcattgaccaatacaatgcctta
agaaaaaagttgaacaatatgataccttcagtttgtatttcatacagcaaatgttctgta
ggcaacgagtgtgtcaagaataggagctgttgcgtcactatggtagcccaggtggaatcc
aactccacgtctcaattggacattatcaaggaaagagtgattccgagcatcctggccaca
ctattgaaaggatttttggaatttgagaatgttaaggtcgaatgtcaacaggatagtgaa
cttgttgtgaaagtcggtatgtctgagcattgcaagacaggcaagttctgggcgacacta
caaaatgcttgcataccaataatggagttgattgattgggaacggagccgaccagagaga
gtatatgatattttctgctcatatggcatagactcagcatggaaatactttgttgaatct
ttaagatcaacaacagatgctattggaaggaatatccatcgacagcacttactggttgtg
gcagactgtctgtctataagtgggcagttccacgggctaagcagtcaaggtttaaagcaa
caaagggcttggttatcaatctcctcgccattttcggaagcatgcttttctaggcctgca
tatagctttataaatgctgcaaagcgagattcagtggacaatctctctggtgctctagat
gcaattgcctggggcaaagaaccttgtgctgggacatcaggtcctttcaaggttctatac
tccggaaagtcacaaaagacaaaacaaaacaagaatatctatgactttctacataacccc
gaagttcaggctttggaaaagaattttatggatacctacaaacaaaggactgaaaaacct
tccaagcagagatcagcattcagttctaaaggcaatgctaccatcaatggtggtaccata
tctgtcaatcagaagtttcttgattctaaagttggcatatgggagaacatcattgacatg
cgcacttgcttgcaaaatatgctaagagagtacacattaaatgaagttgtcacggaacaa
gataaatcatgcttgatagaggcgttgaaatttcatcctagaggatatgacaagattggt
gtggggataagagaaatcaagattggagtgaatcctggtcacccgaactcaaggtgcttc
attgtacaaaggagtgacgatactagtgcagatttctcttacaacaagtgtgtccttggt
gctgcaaactctatctcacctgaacttggaagttatattgagaagatactatctaataga
gcaattcggccacatcagttgtag

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