KEGG   Oryza sativa japonica (Japanese rice): 4337169
Entry
4337169           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4337169
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4337169
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4337169
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     4337169
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 4337169
NCBI-ProteinID: XP_015636222
UniProt: A0A0P0WFD3
LinkDB
Position
4:join(33118163..33118750,33119325..33119531,33120310..33121190,33121265..33121556,33122281..33123297,33123958..33124229,33124616..33125117)
AA seq 1252 aa
MEEPSKDNGQSSCVVDPELEPMMLDDAREGVSHTLDDANGHSSMDVDRGCHSMDTTRSSL
GDDGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELF
DSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARL
QNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLC
WLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIY
IKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINT
ITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKAL
FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDL
NSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDL
RKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLID
RFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIK
RDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDI
RSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIP
FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSE
YTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEV
ENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGE
DHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLES
QENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVI
TDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLT
RQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMR
PVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC
NT seq 3759 nt   +upstreamnt  +downstreamnt
atggaagagccatcaaaggacaatgggcaatcatcctgtgttgttgatcctgagctggaa
cctatgatgctggatgatgctagagagggagtatcccatacattggatgatgcaaatggg
cattcttctatggatgttgacagaggatgccattctatggacaccacgagatcatctctg
ggtgatgatggtaaaggaaagcgcgactcatatgcccaaattccagtcgacatgagtatt
ccaagcctagaaaagttctgcaaagaagcatcaaggtccttctttgatgagattggtctg
atcagccatcagataaattcttataacgagtttgtctcacatgggctccaggaacttttt
gattctctgggggaagtgactgtggagcctagttatgatccttcaaatagaggaccaggt
ggctggagacatgctatcatcaagtttggaagagtgcaactagaagaaccagtattttgg
tctcatggatgtgatattgatgaacaatcgctcaaactgaagccaaggcatgctcgccta
cagaatatgacatattcttccaaaatgaaagtggaagttcatttccaggtttactctatg
gagaagagtgacaaggctaaaacagggaatgataaatttggttacaagcgaaacattatt
aatgaaacatattatataaatattggccgccttccagttatggttatgtcaaatttatgt
tggctccacaaactcaaggaaagtgattgccaatttgattctggtggatactttttgatc
aagggaatggagaaggtattcattgcgcaagagcaaaaatgtctgaccaggatttgggtt
gaggaccgtccttgctggatggtctctttcttgtctccaatcagaagaaggcgcatatat
ataaaactaattgattctgcaaataatgaagatgccagtggggggaagatcatttccatc
tcctttttgtatgcaaatatgccaatatggttgatgttttttgcactaggcatatcatca
gataaggatatctttgatgttataaatatggaagactgtgatgcttgtgttatcaacaca
attaccgcaactattaaagaatcagatgaattgtgtgaaggcttccgtaaatcagataaa
gcccggcagtatgttgacgaattgattaagaattcaaaatttcctcctgcagagccattt
gatgattatattgctaaatacctcttccccagcataagtgggaaccggaacaaagcactt
ttcttaggttacatggtcaaatgccttttaatggctttcactgggaagcgcaaatgtgac
aacaaggatgatttccggaacaagaggttggacctagctggtgaattgcttggaagagaa
ctccgtgcgcatattaggcatgcagagagactcatggttaaggccttgcagagagattta
aatagtgagcgtgagttacaagaatttgatcattatctggatgcttcaattattaccaat
ggtctaaaccgtgccttctctactggttcttggtgccatccttacaaaagaaatgaaaga
tgcgcaggaattgttgcgacactaaggagaacaaatccgcttcagatgatctcggacttg
aggaaaactcgccaacgagttgcttatgctgggaaagccggtgatgcaagatatccaaat
ccatcctactggggaaaattgtgttttatgtccactcctgatggtgaaaactgtggactt
gtgaaaaatctagctgttacagctactgttagctccagagtagcaccgccattgattgac
aggttcatttcttgtggaatgaataagctgcatgagattcctacagaggaggttcctaga
atggataaaatcttcctgaatggggattgggtggggtcctgtagtgacccggcttcattt
gtcttgcgtttaaggtgcatgagacgcagtggtctgatagatccacaggttgagataaaa
cgggacaagcaccaaagggaagttcgggtgttttctgatgcaggtcgaatcctcagaccg
cttcttgtggttgaaaatctcaataaaattaggagaccgaagggcagttcatattctttt
cagtggttaatgcaacaagaaataattgagtttattggcgttgaagaagaggaagatata
cgaagtgcctggggcatcaggaacctatttgagagtgaagaagaggctcccatggtaaaa
atgaataaagcagaggatgtcttcaatgttaagaggaagatcggaggggaggtttcaggt
tatacgcactgtgagctggatctttcttttctgctaggattaagttgtggtattatccct
tttgcgaaccacaattttgctcggagggttctttaccaatctgaaaaacattcacagcaa
gctattggatactctacaacaaatccgcacatcagagttgataccctttcccatcaactt
tactatcctcagagaccccttttcaaaacagtgatagctgactgcattggtagatcagaa
tatacttttgggagaaaggatgactttgccagaccagagtatttcaatggccaaaatgca
atagtggcagtgaatgttcatcaggggtttaatcaagaagattccctggttatgaatagg
gcttctcttgagcggggtatgtttaggactgagcacttcaggaactataaggctgaagta
gagaacaaaggtgggccaggtggcaacaaacgactaaaaatgaaggataagattgacttc
ggtaaaatgcaaagcaagagaggacgtgttgacaatcttgacgatgatggattaccatat
gtcggtgcaagtcttcagagtggtgacattgtcattggaaaggtctcagaatctggtgaa
gatcatagtattaagctgaagcatactgaaaagggtatggtgcagagggtattactttca
gctaatgatgaggggaagaactttgcagttgttactctaagacaggttcgatcaccttgc
cttggagataaattttccagcatgcatggccagaaaggtgtcgttggttttctagaatct
caggagaatttcccatttacttaccaaggaatagtaccagatattgtgataaatccacat
gcatttcctacccgtcaaactccaggccagcttcttgaagctgctttggggaaaggaatt
gccctcggtggtacaatgagatatgctacaccattcacaacagcatcgtttgatgtgatc
acagaccaattacacaaggctggattttcaagatggggagctgaaagtgttctcaatggc
cggactggtgaaaggatgcactcattgattttcatgggtcctactttttaccagaggctg
atacacatggcagaagataaggtcaagttcaggaacacggggccagtgcaccccctaaca
cggcaacctgttgctgacaggaagaggtttgggggagtgaagtttggagaaatggagcgt
gactgcctcctcgcccatggtgcagcagccaacctccatgagcggctcttcatgcttagt
gacttctcgcagatgcacgtctgccagacgtgcgaacgtgtggcgaatgttatcatgagg
cctgtcccaggaggaaagaagatccgggggccatactgtgggttctgccgctcttctgaa
aacatagtaaggatcaatgtgccctacggcgcaaagctgctctatcaagagctattcagc
atggggatctgccttagatttgagacggaagtctgctag

KEGG   Oryza sativa japonica (Japanese rice): 4344774
Entry
4344774           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4344774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4344774
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4344774
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     4344774
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 4344774
NCBI-ProteinID: XP_015648872
LinkDB
Position
8:complement(join(4239144..4239657,4241047..4241318,4241642..4242589,4243706..4243997,4244096..4244967,4245908..4246114,4246576..4247205))
AA seq 1244 aa
MEDPEITGQQSPNATSIVTDLMDLDDIIVEGNEVQFAMDVDLRAIPSLKDGGHTDPLVQI
PGDMSHMDVDLRVIPSLKDGGHADPPVQVPVDKRIASLEKLCKEASRSFFRETRLVSHQI
NSYNDFVSHGLQKMFDSLDEVTVEPDYDPSKKVGPWRHATIKFGRVELEEPVFWVDNCDL
DVETLKLKPKHARLQKMTYSSKMKVEMTVQVYSLHKSDKAKTGEDPYIQRKDIMKETKWV
TIGKLPVMVKSNLCWLHKLQESECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWINDSPTW
EACYQRSQIRREKISIKPVQSNDGFRKVINLYFLGATIPIWIMFFALGVSSDKEAFDIID
IQECDASMANIISATITESHEQCEGFQREGRASEYIDKLIRNTKFPPKGSFDEYIGRHMF
PDVSGNRSKALFLGYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQ
KRMVKVMQRHLSGDGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLR
RTNPLQMMSDMRKTRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAI
VSCLAREPSVDALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRR
RKQIDAQVEIKRDKQNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNII
ELIGVEEEEDIRCAYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKR
ILMQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDF
ARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRL
KHKENINFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKG
IVEKVVLSATDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIV
PDIVINPHGFPTRQTPGQLLEAALGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRW
GGESVINGRTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGG
VKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKV
RGPYCRFCRSAEEVVRVSVPYGAKILYQELFSMGICLKFDTELI
NT seq 3735 nt   +upstreamnt  +downstreamnt
atggaagatcctgaaattactggtcagcagtcaccaaatgccacaagtattgtgacggat
ctcatggatttggatgacattattgttgagggcaatgaggtacagtttgctatggatgtg
gatttgagagcaataccatctctgaaagatggagggcacacagacccactggtacaaatc
ccaggtgacatgtctcatatggatgtggatttgagagtgataccatctctgaaagatgga
gggcatgcagacccaccagtacaagtcccagttgacaagaggattgcaagcctagagaag
ctctgtaaagaagcatcaagatcatttttcagggaaactaggctagttagccatcagata
aactcctacaatgattttgtctctcatgggctccaaaagatgtttgattctctcgatgaa
gttactgtcgagcctgactatgatccttcaaagaaagtaggcccctggaggcacgcgacc
atcaagtttggtcgagtggagcttgaggagccggtgttttgggtcgacaactgtgatctt
gatgtggaaacactcaaactgaagcctaaacatgctcgcctccagaagatgacatactct
tcaaagatgaaagtagaaatgactgttcaggtctattcactccacaaaagcgacaaagct
aaaactggcgaggacccatatatacaaagaaaagatataatgaaagagactaaatgggtc
actattggcaagttacctgtcatggtgaagtcaaatttgtgctggctgcataaacttcag
gaaagcgaatgcgagtatgattttggtggatattttcttatcaagggaatggaaaaggta
ttcgttgctgaagagcagagatgcctctccaggatttggatcaatgacagccccacctgg
gaggcttgttaccaacggtctcaaatccgacgagaaaagatctctataaaacctgttcag
tctaatgatggtttcagaaaagtcattaacctgtactttttgggtgcaactataccaatc
tggataatgttttttgcactaggtgtatcatcagacaaagaagcttttgatattattgac
atacaagaatgtgatgcttccatggccaacataatatcagctactataactgaatctcat
gagcagtgcgaaggctttcagagagaagggagagccagtgaatatattgataagttgatc
aggaatacaaagtttccaccaaaaggatcctttgatgagtatattggtaggcatatgttt
cctgatgttagtgggaataggagcaaagcactcttcttgggatacatggtgagatgtctt
ctattggcttcctctggcaatcggaagagtgataatagggatgatttccgcaacaagagg
ctggatttggcatgtgaattgctccagagagagctatgggtacatattatgcatgcccag
aaacgtatggtcaaggtcatgcagagacatttgagtggtgatggtgacctacaacctctt
gagtgttatgtccatgcatcaattgttaccaatggtctcaaccgtgccttctccactggt
tcctggtgccatccatttaataaaagagagaggtgttcagggattgttgcaacccttagg
agaacaaatcctcttcaaatgatgtctgacatgaggaagacacgacaatgggttgcatat
gctggaaaggctggagatgctagatatccgaatccatcatattggggaaagctatgtttc
ttgtccactcctgatggtgaaaagtgtggatttgtgaaaaatcttgccattactgctatc
gttagttgtttggcaagggagccctcggttgacgcacttgtttcttgtgggatgaagaaa
ctggatgaactgcttctacaagagatcagcgggaaagacagaatcttcttgaatggaaac
ttggttggagtttgtgcagactcagtcgagtttgttttgcacttaaggagcatgagacgc
aggaagcaaattgatgcacaggtggagatcaaaagggacaagcaaaacaaagaagttcgt
atattttccgatccaggaaggattctaagacctcttcttattgtcgaaaatctacgaaac
atcatgaatcgaaagaatggatcatactccttccaggaacttatggatcaaaatataatt
gagctgattggtgttgaagaagaggaggatatccggtgtgcttatggaattaggcatctc
tttgcaggggacgaagaaaagaatttctcattctatactcattgtgaacttgacccttct
ttcttgctaggattgagttgcagtatcattccctttgccaaccatgatactgctaagaga
attctaatgcaagctgaaaagatatcgcaacaggctattggctactccactacgaatcct
ctctttagagttgatacacattcccatcagctctattatccacagagacctctgttcaaa
actgtagctgctgattgtcttggtaagagagactatacatctggaagcaaacatgacttt
gccagaccagagtatttcaatggccaaaatgcaatagtctcaatcagtgtccatcaggga
tttaaccaagaggattctttggtattgaatagggcctctttagagcgtggcatgtttcga
acacaacattttaagagctataaagcactgatagaaaacaaagagatcaccaaacgatta
aaacacaaggaaaatatcaattttggaaaaactcctagcaagaaaggcctggttgacagt
ttagatattgatggcttaccatatattggagcaagtcttcagagtaatgacattatcatt
ggaaaggtctcagactctggtgaagatcatagcatcaagctgctacatactgaaaaagga
atagtggagaaggttgttctttcagctactgatgatgggacaaattctgcgtttgttact
ctaagacagactcgctcgccacgcattggagacaagtttgccagcatgcatggccagaaa
ggagtcattggcttcttggattcccaggagaacttcccttttactcaccaaggcatagtt
cctgacattgtgatcaatccccatggctttccaactcgtcagactcccggccaacttctt
gaagctgcactaggcaaaggaatcgccctcggcggtgccacccggtatgcgacaccgttc
acaagtccatctgtggaagtgatcacagagcagctgcacaaggctgggttctccaggtgg
ggaggggagagcgtgatcaacggccgcaccggcgagcgtgcggcgtcgccggtgttcacc
ggaccgacgttctaccagcggctccaccacatggccgaggacaaggtcaagttccggaac
accggcccggtgcacccgctgacgcggcagccggtggaggaccgccgccggtacggcggc
gtcaagttcggcgagatggagcgcgactgcctcctcgcccacggcgccgccgccaacctc
cacgagcgcctcttcctcctcagcgacgtgtcgcgcctccacgtctgccgccgatgccag
cgcgccgccgtcgtcgtgtcgcccgccgtcgccgccgacggcggcggcggccggaaggtg
agggggccgtactgcaggttctgcaggtcggcggaggaggtggtgagggtgagcgtgcct
tatggcgccaagatcctctaccaggagctcttctccatgggcatctgcctcaagttcgac
accgagctcatctag

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