Oryza sativa japonica (Japanese rice): 4337536
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Entry
4337536 CDS
T01015
Name
(RefSeq) vacuolar protein sorting-associated protein 60.2
KO
K12198
charged multivesicular body protein 5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
4337536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4337536
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
4337536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Snf7
Lebercilin
SOAR
DUF1319
Prefoldin
Motif
Other DBs
NCBI-GeneID:
4337536
NCBI-ProteinID:
XP_015637649
UniProt:
A0A0P0WH83
Q9FW24
LinkDB
All DBs
Position
5:join(182437..182505,182605..182756,183442..183535,183630..183701,183839..183950,184343..184491,185095..185145)
Genome browser
AA seq
232 aa
AA seq
DB search
MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA
IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM
KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESN
SVPSYLQPDKESDLDSELNLPAAPTGHTPAPPNRQQEDELGLPTVPQASIRS
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagatcttcggcgccaagaagaaccaggagcccccgcccagcatccaggatgcc
accgatcggatcagcaagaggggcgactccgtggacgacaagatcaagaagctggacgct
gagctcgcccgctacaaggaccagatcaagaagaccaggccaggccccgcccaggaggcc
atcaaggcacgcgccatgagggtcctcaagcagcgcagaatgtacgaagggcagcgtgac
atgctgtacaaccaaacatataaccttgaccaagttgcttttgcatcagagggacttaaa
gatgctcagcaaacgatgactgcaatgaaggcagccaataaagagctgaaaggaatgatg
aaaactgtcaagcttgaagatatagatagcttgcaagacgagatgatggatcttatggat
gtgagcaatgaaatacaggaaactctcggaagaagctacaatgtccctgatgacattgac
gaggaagaacttatgggggagcttgatgctttggaagccgacatggactttgaatcaaat
tcagtcccctcgtaccttcaaccagataaggaatcagatctagattctgagcttaacttg
cctgctgcaccaacgggtcacacacccgccccaccaaaccggcagcaggaggacgaattg
ggattgccgacagtgccacaagcatcgatccgtagttga
Oryza sativa japonica (Japanese rice): 9266052
Help
Entry
9266052 CDS
T01015
Name
(RefSeq) vacuolar protein sorting-associated protein 60.1
KO
K12198
charged multivesicular body protein 5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
9266052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
9266052
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
9266052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Snf7
Prefoldin
DUF948
COG6_N
Fmp27_WPPW
SOAR
Nup54
Motif
Other DBs
NCBI-GeneID:
9266052
NCBI-ProteinID:
XP_015617267
UniProt:
C7IW85
Q9FTZ4
LinkDB
All DBs
Position
1:complement(join(175451..175501,175812..175960,176170..176281,176804..176875,176984..177077,177176..177327,177410..177478))
Genome browser
AA seq
232 aa
AA seq
DB search
MKKIFGAKKSKDPPPSIQDATERINKRGESVDDKIKKLDEELGRYKEQIRKTRPGPSQDA
IKARAIRLLKHKRMYEEQRNMLYNQTYNLDQVAFAADGLKDAQQTMNAMKAANKELKGMM
KTVKIEDIDNMQDEMTDLMDVSNEIQESLGRSYNIPDDVDEEELMGELDALEADMEFESS
AVPSYLQPDKESDFDAELNLPAAPTAPAAVPVSRQQVDELGLPAVPRASIRS
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagatctttggagccaagaagagcaaggacccgcccccatccatccaggacgct
accgaacgaatcaacaagaggggggagagcgtggacgacaagatcaagaagctggacgaa
gagctcggccgttacaaggagcagatcaggaagacacgccctggaccctcccaggacgcc
attaaggcccgcgccatcaggcttctcaagcacaagcgcatgtacgaagaacagcgcaac
atgctctacaaccagacctataatctcgaccaagtcgctttcgctgccgatggcctcaaa
gacgctcagcagaccatgaatgccatgaaggccgccaataaagagctcaagggaatgatg
aagacagtcaagattgaggacatcgataatatgcaagatgaaatgactgacctgatggat
gtgagcaacgaaatacaagaatcccttggtagaagctacaacatccctgacgatgttgat
gaggaagaactaatgggagaactggatgctttggaggctgatatggagtttgagtcaagt
gcagtcccatcgtatcttcaaccagacaaggaatccgatttcgatgcagagcttaatttg
ccagctgcacctaccgctcctgcagcagtcccagtaagcaggcagcaggtggatgagcta
ggattgccagcagtccctcgagcatcaatccgcagttag
DBGET
integrated database retrieval system
