Oryza sativa japonica (Japanese rice): 4337553
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Entry
4337553 CDS
T01015
Name
(RefSeq) E3 ubiquitin-protein ligase CHIP isoform X1
KO
K09561
STIP1 homology and U-box containing protein 1 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04120
Ubiquitin mediated proteolysis
osa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
4337553
04120 Ubiquitin mediated proteolysis
4337553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
osa03110
]
4337553
04131 Membrane trafficking [BR:
osa04131
]
4337553
04121 Ubiquitin system [BR:
osa04121
]
4337553
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4337553
Chaperones and folding catalysts [BR:
osa03110
]
Other chaperones and cochaperones
Others
4337553
Membrane trafficking [BR:
osa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
4337553
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
U-box type E3
4337553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U-box
TPR_2
TPR_11
TPR_1
TPR_17
zf-NOSIP
TPR_16
TPR_14
Motif
Other DBs
NCBI-GeneID:
4337553
NCBI-ProteinID:
XP_015637790
LinkDB
All DBs
Position
5:complement(join(271886..272011,272442..272552,272649..272793,272979..273112,273544..273642,273715..273778,273862..273929,274034..274150))
Genome browser
AA seq
287 aa
AA seq
DB search
MATAADGVAVARQAELRRIEGNSCFNKARLGAAIDCYTEAIALCPDVAVYWLNRGLCHFK
RKEWAKVEEDSRRALALDDTLVKGHYLLGCAMLEKEQCALAIKEFNKVCYYTSMALALDL
LKSSNLGDKMAEDIWQVLAKAKYQDWEIHSTKRVWKMQSLKEACENALQEHHFLSGTLVG
DGSTNEYTDQLKLLSEVFTKATIDDTPTDVPDYLCCQITFEIFRDPVITPSGITYERSII
LEHLCKVGNFDPVTREPLKEHQLVPNLAIKEAVQAYLKNHSWAYKLN
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcggatggcgtggcggtagcgaggcaagcggagctccggcggatcgag
ggcaactcctgcttcaacaaggcccgcctcggcgccgccatcgactgctacaccgaggct
atcgctctttgccccgacgtcgccgtctactggctcaaccggggcctctgccatttcaag
cgcaaggaatgggctaaggtcgaagaggatagcaggagagctcttgcccttgatgacact
ctggtcaagggtcactatttgctgggatgtgccatgcttgagaaggaacaatgtgctctt
gctatcaaggaattcaacaaggtttgttattatacttctatggcccttgctttggatctt
cttaagtcttcgaatttgggggacaaaatggcggaggacatttggcaggttcttgcgaag
gcaaaataccaagattgggaaatacactccactaagagagtttggaagatgcaaagttta
aaggaagcatgtgaaaatgctttgcaggagcaccactttcttagtggcacacttgtggga
gatggctcaaccaatgagtatacagaccaactgaaattgttatcagaagtcttcaccaaa
gctacaatcgacgatacaccaacagatgtgcctgactacctttgctgccaaataaccttt
gagatttttagagatccagtgatcacacccagtggtataacgtatgagaggtccataatc
cttgaacatctttgcaaggtgggcaatttcgacccggtgacacgagagcctctgaaagag
catcaattggttcctaacctggctataaaggaagcagtccaagcctacctcaagaatcac
agttgggcctacaagttgaactga
Oryza sativa japonica (Japanese rice): 4344499
Help
Entry
4344499 CDS
T01015
Name
(RefSeq) E3 ubiquitin-protein ligase CHIP
KO
K09561
STIP1 homology and U-box containing protein 1 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04120
Ubiquitin mediated proteolysis
osa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
4344499
04120 Ubiquitin mediated proteolysis
4344499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
osa03110
]
4344499
04131 Membrane trafficking [BR:
osa04131
]
4344499
04121 Ubiquitin system [BR:
osa04121
]
4344499
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4344499
Chaperones and folding catalysts [BR:
osa03110
]
Other chaperones and cochaperones
Others
4344499
Membrane trafficking [BR:
osa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
4344499
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
U-box type E3
4344499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U-box
TPR_1
TPR_2
TPR_11
TPR_17
TPR_16
ANAPC3
TPR_8
TPR_14
zf-NOSIP
TPR_9
TPR_19
TPR_15
zf-Nse
Motif
Other DBs
NCBI-GeneID:
4344499
NCBI-ProteinID:
XP_015648635
UniProt:
B9FYR2
LinkDB
All DBs
Position
8:join(721269..721385,722208..722275,722382..722445,724305..724376,724713..724846,724932..725061,725142..725252,725335..725460)
Genome browser
AA seq
273 aa
AA seq
DB search
MSPAADSAASKRQAELLKQEGNAFFKKDRISAAIDAYTGAIALCPKVAVYWTNRALCYKR
RNEWVRAEEDCRTAIQLDSHSVKAHYMLGLALLNKDELAEGIKELEKSLELGRGAHPASY
MVEEIWQELSKAKYIEWENLSSERVRQLHKLKEACKEALRNYNSLDNPPAYVPEEQLNEL
EEVFRNARKSDIPTEVPDHLCCKITLDIFRDPVITPSGITYERAVILDHLHRVGKFDPVT
RETLEPHQLVPNLAIKEAVHAFLSEHGWAYRMR
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccggcggcggacagcgcggcgtcgaagcggcaggcggagctgctcaagcaggag
ggcaacgccttcttcaagaaggaccgcatcagcgccgccatcgacgcctacaccggggcc
atagctctctgcccaaaggttgcagtatattggaccaaccgagcactttgctacaagagg
cggaatgagtgggttagggctgaggaagattgtagaacagctattcagcttgacagccac
tctgttaaggcacattacatgctcgggcttgcacttctcaacaaggacgaattggccgag
ggaataaaagaactagagaagtcgttggagcttggaaggggtgcacatccagcaagttac
atggttgaagagatctggcaagagctttctaaagcaaaatacatagaatgggaaaattta
tcaagcgaacgagtccgtcaattgcataagctgaaggaagcatgtaaagaagctcttagg
aattataacagccttgacaatcctcctgcatatgtccccgaggaacagctaaatgagctt
gaggaagtttttcggaatgccaggaagtctgatattccaacagaagttcctgatcatctc
tgctgcaaaattactcttgatattttcagagacccggtgataaccccaagtggaatcacg
tatgagagggcggtgattcttgatcatcttcatagggtggggaagtttgatcctgtgacc
cgtgagacacttgaaccacaccaactggttcctaaccttgccatcaaggaagctgtccat
gcatttttgagtgaacatggttgggcttacaggatgagatga
DBGET
integrated database retrieval system
