KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4338670
Entry
4338670           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4338670
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4338670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4338670
   03041 Spliceosome [BR:osa03041]
    4338670
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4338670
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4338670
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4338670
SSDB
Motif
Pfam: LSM LSM14
Other DBs
NCBI-GeneID: 4338670
NCBI-ProteinID: XP_015637744
UniProt: Q60E54 B9F364
LinkDB
Position
5:complement(18838336..18840816)
AA seq 89 aa
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDVA
NT seq 270 nt   +upstreamnt  +downstreamnt
atgtctcagaacaacccctcccagctcctcccctcagagctgattgaccgctgcatcggg
tccaagatttgggtgattatgaagggtgacaaggagctcgtcggcactctctgtgggttc
gatgtgtacgtcaacatggtgctcgaggacgttactgagtatgaatacactgctgaaggc
cgtcgcataacaaagcttgatcagatactcctaaacggcaacaatatagctattttggtt
cctggtggttctcccccagatgtggcataa

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