Oryza sativa japonica (Japanese rice) (RefSeq): 4338670
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Entry
4338670 CDS
T01015
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4338670
09123 Folding, sorting and degradation
03018 RNA degradation
4338670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4338670
03041 Spliceosome [BR:
osa03041
]
4338670
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4338670
mRNA degradation factors
5'-3' decay
Lsm complex
4338670
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
4338670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
LSM14
Motif
Other DBs
NCBI-GeneID:
4338670
NCBI-ProteinID:
XP_015637744
UniProt:
Q60E54
B9F364
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All DBs
Position
5:complement(18838336..18840816)
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AA seq
89 aa
AA seq
DB search
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDVA
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaacaacccctcccagctcctcccctcagagctgattgaccgctgcatcggg
tccaagatttgggtgattatgaagggtgacaaggagctcgtcggcactctctgtgggttc
gatgtgtacgtcaacatggtgctcgaggacgttactgagtatgaatacactgctgaaggc
cgtcgcataacaaagcttgatcagatactcctaaacggcaacaatatagctattttggtt
cctggtggttctcccccagatgtggcataa
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