Oryza sativa japonica (Japanese rice): 4339549
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Entry
4339549 CDS
T01015
Name
(RefSeq) syntaxin-71
KO
K08506
syntaxin of plants SYP7
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4339549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4339549
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[C] (Qc)
Syp7
4339549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Ran-binding
TTRAP
Motif
Other DBs
NCBI-GeneID:
4339549
NCBI-ProteinID:
XP_015639751
UniProt:
A0A0P0WQ70
LinkDB
All DBs
Position
5:join(27700083..27700238,27700340..27700468,27701340..27701505,27702198..27702283,27702394..27702462,27702558..27702602,27702706..27702768,27702857..27702933,27703134..27703149)
Genome browser
AA seq
268 aa
AA seq
DB search
MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQE
KNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS
IPDGSSSAKKNGTWGASGSRTGGAIKFDTSDGNFDDEYFKGTEESNQFRREYEMRKMKQD
EGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLR
SSRNFCIDIVLLCVILGIAAYLYNVLKK
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtac
gacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctac
ggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaagcaggag
aagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctc
gtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagggctcaca
aaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatca
ataccagatggtagttcaagtgcaaagaaaaatgggacttggggcgcctcaggatcccgt
actggtggagccattaagtttgacacttctgatggcaactttgatgatgagtactttaag
ggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaaaatgaaacaggat
gaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatctgatatg
aatgaggaactggataggcaagttcccttgatggatgaaatggacgagaaggtggataga
gccaacacagatttgaagaataccaacgtcagactaaaagagaccgttcttcagctgaga
tctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttggtattgcggct
tatctttacaatgttctaaaaaagtga
Oryza sativa japonica (Japanese rice): 4346842
Help
Entry
4346842 CDS
T01015
Name
(RefSeq) syntaxin-71 isoform X1
KO
K08506
syntaxin of plants SYP7
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4346842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4346842
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[C] (Qc)
Syp7
4346842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
DUF5089
V-SNARE_C
TMP_N
Ran-binding
PIG-S
Fib_alpha
CbiA
Hydro_N_hd
Motif
Other DBs
NCBI-GeneID:
4346842
NCBI-ProteinID:
XP_066160238
LinkDB
All DBs
Position
9:join(16057085..16057234,16057315..16057440,16057593..16057743,16057958..16058043,16058205..16058273,16058378..16058422,16058868..16058930,16059024..16059143)
Genome browser
AA seq
269 aa
AA seq
DB search
MSMIDVLIRVDAICKKYDKYDADKHRNGAAGDPFSRLYAAVDADIDAAVERSERAATETN
RAAAVALNADVRRTKARLTEEVVKLRKLAAKKVKGLSPEEALRGDLVLALPHRIQSIPDG
GGGAADQYGGGNVRPGIKFDSSAENLDEAYFQTTEESEEFRREYEMRRTKQDEGLEFISE
GLDTLKSLAEDMNEELNRQMPMMDEIDNKVDKSNEDLRKTNVRLKETVNQFRSTRNFMID
LILICIILGIAAYLYEQVFIFSLITSLLF
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgatcgacgtgctgatccgggtggacgccatctgcaagaagtacgacaagtac
gacgccgacaagcaccgcaatggcgccgccggcgacccgttctcgcggctgtacgccgcc
gtcgacgccgacatcgacgccgccgtcgagagatccgagagggccgcgacggagacgaac
cgggcggcggcggtggcgctcaacgccgacgtgcggcgcaccaaggcgcggctcacggag
gaggtcgtcaagctccggaagctcgccgccaagaaggtgaaagggctctcgccggaggag
gcgctgcggggcgacctggtcttggcattgccgcataggatccagtccatccctgacggc
ggcggtggcgcggcggatcagtacggcggcgggaatgtccggccggggatcaagttcgat
tcttcagctgaaaatttggacgaggcgtacttccaaaccaccgaagaatcggaggagttc
agaagagagtacgaaatgcggcgaaccaaacaggatgaagggctggagttcatctctgaa
ggtttggacacactgaaaagcctggcagaggacatgaacgaggaactgaacaggcagatg
cctatgatggatgagattgacaacaaggtggataaatctaatgaagacctcagaaagact
aatgtcaggctaaaagaaacggtcaaccagtttcgatcgaccaggaacttcatgattgat
cttatcttgatttgcatcattcttggcattgctgcctacctctacgagcaagtgttcatc
ttttcattgattacttcgcttttgttctag
DBGET
integrated database retrieval system
