Oryza sativa japonica (Japanese rice) (RefSeq): 4340263
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Entry
4340263 CDS
T01015
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4340263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4340263
Spliceosome [BR:
osa03041
]
Complex B
Other components
Prp19-related factors
4340263
Complex C
4340263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
4340263
NCBI-ProteinID:
XP_015643850
UniProt:
Q5SNN4
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All DBs
Position
6:complement(3536737..3540232)
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AA seq
482 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRIT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGK
PQAPKPEDDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNIPAP
PGAERTLYPSMDPQRMGALVKSQEGDGKPGPQQAAQAQASSSSGQSYPMPPQYYHGQYPP
YYPPYGGYMPPPRMPYPPPPQYPPYQPMLATPAQSQASSSQQPAPATLHQAQVPPPQQTT
QN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggtccgacttcccc
atcatctgcgagtcctgcctcggcgacaacccctacgtccgcatgttgagagcagaatat
gataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgttggcgacctggccgg
gatgcaagatacaagaagacagagatctgccagacatgttgcaaactgaaaaatgtctgc
caggtctgcctgctagatcttgaatatggtctaccggtccaggttagggatacagcactc
gctattaattcaaatgatgcaatcccaaggagtgatgtgaaccgtgagtactttgcagaa
gagcatgatcgcaaggccagggctggaatagattatgattcttcccatgggaaggcacgt
cccaatgacaccattctgaagcttcagaggacggcaccatattacaagaggaatcgagct
catgtctgcagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcga
catgagatgcctgaaactggagagttatctcagcagaacattaaagatcgttactatgga
gttaatgatccagttgctttgaaacttttgggtaaggccggtgagatgccatccctgaca
cctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatcacc
gagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatggtt
ctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctgca
gaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggtaag
cctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatgga
ggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccacct
ggaatggagggacaacagcaagcaccatcgggatcatactacttcaacattccagcaccg
ccaggagcagagcggacactgtacccttcaatggatccccagaggatgggtgccttggtc
aagtcacaggagggtgatggcaaacccggtccacagcaggcagcccaagctcaggcatca
agcagctcaggacagagttaccctatgccaccacaatattaccatggtcagtacccaccc
tactacccaccgtatggcggttacatgcccccacctcgcatgccatacccaccgccaccg
cagtatccgccttatcagccgatgttggcaacaccagcacagtcgcaagctagctcatca
caacaacctgcaccagcaacgctgcaccaggctcaagtccctcctccgcagcagacgacc
cagaactga
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integrated database retrieval system
