KEGG   Oryza sativa japonica (Japanese rice): 4340263
Entry
4340263           CDS       T01015                                 
Symbol
OsC3H40, P0675A05.7
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4340263 (OsC3H40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4340263 (OsC3H40)
Spliceosome [BR:osa03041]
 Complex B
  Other components
   Prp19-related factors
    4340263 (OsC3H40)
 Complex C
    4340263 (OsC3H40)
SSDB
Motif
Pfam: STL11_N RRM_1 Torus zf_CCCH_4 zf-CCCH_2 RRM_occluded zf-CCCH zf-CCCH_3 RRM_3 zf-CCCH_10 zf-CCCH_4
Other DBs
NCBI-GeneID: 4340263
NCBI-ProteinID: NP_001408160
LinkDB
Position
6:complement(join(3700516..3701365,3701912..3702135,3702543..3702812,3703351..3703455))
AA seq 482 aa
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRIT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGK
PQAPKPEDDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNIPAP
PGAERTLYPSMDPQRMGALVKSQEGDGKPGPQQAAQAQASSSSGQSYPMPPQYYHGQYPP
YYPPYGGYMPPPRMPYPPPPQYPPYQPMLATPAQSQASSSQQPAPATLHQAQVPPPQQTT
QN
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggtccgacttcccc
atcatctgcgagtcctgcctcggcgacaacccctacgtccgcatgttgagagcagaatat
gataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgttggcgacctggccgg
gatgcaagatacaagaagacagagatctgccagacatgttgcaaactgaaaaatgtctgc
caggtctgcctgctagatcttgaatatggtctaccggtccaggttagggatacagcactc
gctattaattcaaatgatgcaatcccaaggagtgatgtgaaccgtgagtactttgcagaa
gagcatgatcgcaaggccagggctggaatagattatgattcttcccatgggaaggcacgt
cccaatgacaccattctgaagcttcagaggacggcaccatattacaagaggaatcgagct
catgtctgcagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcga
catgagatgcctgaaactggagagttatctcagcagaacattaaagatcgttactatgga
gttaatgatccagttgctttgaaacttttgggtaaggccggtgagatgccatccctgaca
cctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatcacc
gagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatggtt
ctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctgca
gaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggtaag
cctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatgga
ggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccacct
ggaatggagggacaacagcaagcaccatcgggatcatactacttcaacattccagcaccg
ccaggagcagagcggacactgtacccttcaatggatccccagaggatgggtgccttggtc
aagtcacaggagggtgatggcaaacccggtccacagcaggcagcccaagctcaggcatca
agcagctcaggacagagttaccctatgccaccacaatattaccatggtcagtacccaccc
tactacccaccgtatggcggttacatgcccccacctcgcatgccatacccaccgccaccg
cagtatccgccttatcagccgatgttggcaacaccagcacagtcgcaagctagctcatca
caacaacctgcaccagcaacgctgcaccaggctcaagtccctcctccgcagcagacgacc
cagaactga

KEGG   Oryza sativa japonica (Japanese rice): 4342926
Entry
4342926           CDS       T01015                                 
Symbol
OsC3H49, OsJ_23846
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4342926 (OsC3H49)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4342926 (OsC3H49)
Spliceosome [BR:osa03041]
 Complex B
  Other components
   Prp19-related factors
    4342926 (OsC3H49)
 Complex C
    4342926 (OsC3H49)
SSDB
Motif
Pfam: STL11_N RRM_1 Torus zf_CCCH_4 zf-CCCH_2 zf-CCCH RRM_occluded zf-CCCH_3 zf-CCCH_10 zf-CCCH_4 RRM_3
Other DBs
NCBI-GeneID: 4342926
NCBI-ProteinID: NP_001409032
LinkDB
Position
7:complement(join(10769731..10770592,10772311..10772534,10772961..10773230,10773779..10773883))
AA seq 486 aa
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT
EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQPASASYYFNIPAP
PAAERTLYPSMDPQRMGALVESQEGDGKPGPQQAGQGQASSSSGQSYPEPPPPYYHGGQY
PPYYPPYGGYMPPPRMPYQQPPQYPAYQPMLAPPAQSQASSLQQPAPATQQLGQGPQQQT
TQNGMT
NT seq 1461 nt   +upstreamnt  +downstreamnt
atggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccgacttcccc
atcatctgcgagtcctgcctcggcgacaacccctacgttcgcatgttaagagcagaatac
gataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttggcgacctggccgg
gatgcaaggtacaagaagacagagatctgccagacttgttgcaaactgaaaaatgtctgc
caggtctgccttctagatcttgaatatggtctgccggtccaggtcagggatacagcactt
tctactaattcaaacgatgcaatcccaaggagtgacgtgaaccgcgagtactttgcagaa
gagcatgatcgcagggccagagctggaattgattatgactcttccaatggtaaggcacgt
gccaacgacaccattctgaaactccagagaacagcgccatattacaagaggaatcgagcc
catgtctgtagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcga
catgagatgcctgaaactggagagttatctcagcagaacatcaaagatcgttactacgga
gttaacgatccagttgctttgaagcttttgagtaaggctggtgagatgccatccctgaca
cccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtcact
gagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatggtt
ctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctgca
gaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggcaag
cctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatgga
ggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctcct
gggatggaaggccagcagcaacctgcttcggcatcatactacttcaacattccagcaccg
ccagcggcagagcggacactgtacccttcgatggatccccagaggatgggtgccttggtc
gagtcacaggagggcgatggcaaaccaggtccacagcaggctgggcaaggtcaggcatca
agcagctcaggacagagttatcctgagccgccaccaccatattaccatggtggtcagtat
cccccctactatccaccttatggcggttacatgcccccacctcgcatgccataccagcag
ccaccacagtacccagcttatcaacctatgctggcaccaccagcacagtcgcaagctagc
tcattgcaacaaccagcaccggcaacgcagcagctgggtcaaggccctcagcaacagaca
acccagaacggaatgacttaa

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