Oryza sativa japonica (Japanese rice): 4340263
Help
Entry
4340263 CDS
T01015
Symbol
OsC3H40, P0675A05.7
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4340263 (OsC3H40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4340263 (OsC3H40)
Spliceosome [BR:
osa03041
]
Complex B
Other components
Prp19-related factors
4340263 (OsC3H40)
Complex C
4340263 (OsC3H40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
4340263
NCBI-ProteinID:
NP_001408160
LinkDB
All DBs
Position
6:complement(join(3700516..3701365,3701912..3702135,3702543..3702812,3703351..3703455))
Genome browser
AA seq
482 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRIT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGK
PQAPKPEDDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNIPAP
PGAERTLYPSMDPQRMGALVKSQEGDGKPGPQQAAQAQASSSSGQSYPMPPQYYHGQYPP
YYPPYGGYMPPPRMPYPPPPQYPPYQPMLATPAQSQASSSQQPAPATLHQAQVPPPQQTT
QN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccggctgctgcgagacgcgcaggcggacgggtgggagcggtccgacttcccc
atcatctgcgagtcctgcctcggcgacaacccctacgtccgcatgttgagagcagaatat
gataaagagtgcaaaatatgtgcacgtccgtttactgtcttccgttggcgacctggccgg
gatgcaagatacaagaagacagagatctgccagacatgttgcaaactgaaaaatgtctgc
caggtctgcctgctagatcttgaatatggtctaccggtccaggttagggatacagcactc
gctattaattcaaatgatgcaatcccaaggagtgatgtgaaccgtgagtactttgcagaa
gagcatgatcgcaaggccagggctggaatagattatgattcttcccatgggaaggcacgt
cccaatgacaccattctgaagcttcagaggacggcaccatattacaagaggaatcgagct
catgtctgcagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcga
catgagatgcctgaaactggagagttatctcagcagaacattaaagatcgttactatgga
gttaatgatccagttgctttgaaacttttgggtaaggccggtgagatgccatccctgaca
cctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatcacc
gagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatggtt
ctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctgca
gaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggtaag
cctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatgga
ggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccacct
ggaatggagggacaacagcaagcaccatcgggatcatactacttcaacattccagcaccg
ccaggagcagagcggacactgtacccttcaatggatccccagaggatgggtgccttggtc
aagtcacaggagggtgatggcaaacccggtccacagcaggcagcccaagctcaggcatca
agcagctcaggacagagttaccctatgccaccacaatattaccatggtcagtacccaccc
tactacccaccgtatggcggttacatgcccccacctcgcatgccatacccaccgccaccg
cagtatccgccttatcagccgatgttggcaacaccagcacagtcgcaagctagctcatca
caacaacctgcaccagcaacgctgcaccaggctcaagtccctcctccgcagcagacgacc
cagaactga
Oryza sativa japonica (Japanese rice): 4342926
Help
Entry
4342926 CDS
T01015
Symbol
OsC3H49, OsJ_23846
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4342926 (OsC3H49)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4342926 (OsC3H49)
Spliceosome [BR:
osa03041
]
Complex B
Other components
Prp19-related factors
4342926 (OsC3H49)
Complex C
4342926 (OsC3H49)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
RRM_occluded
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
RRM_3
Motif
Other DBs
NCBI-GeneID:
4342926
NCBI-ProteinID:
NP_001409032
LinkDB
All DBs
Position
7:complement(join(10769731..10770592,10772311..10772534,10772961..10773230,10773779..10773883))
Genome browser
AA seq
486 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT
EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQPASASYYFNIPAP
PAAERTLYPSMDPQRMGALVESQEGDGKPGPQQAGQGQASSSSGQSYPEPPPPYYHGGQY
PPYYPPYGGYMPPPRMPYQQPPQYPAYQPMLAPPAQSQASSLQQPAPATQQLGQGPQQQT
TQNGMT
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccgacttcccc
atcatctgcgagtcctgcctcggcgacaacccctacgttcgcatgttaagagcagaatac
gataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttggcgacctggccgg
gatgcaaggtacaagaagacagagatctgccagacttgttgcaaactgaaaaatgtctgc
caggtctgccttctagatcttgaatatggtctgccggtccaggtcagggatacagcactt
tctactaattcaaacgatgcaatcccaaggagtgacgtgaaccgcgagtactttgcagaa
gagcatgatcgcagggccagagctggaattgattatgactcttccaatggtaaggcacgt
gccaacgacaccattctgaaactccagagaacagcgccatattacaagaggaatcgagcc
catgtctgtagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcga
catgagatgcctgaaactggagagttatctcagcagaacatcaaagatcgttactacgga
gttaacgatccagttgctttgaagcttttgagtaaggctggtgagatgccatccctgaca
cccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtcact
gagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatggtt
ctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctgca
gaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggcaag
cctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatgga
ggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctcct
gggatggaaggccagcagcaacctgcttcggcatcatactacttcaacattccagcaccg
ccagcggcagagcggacactgtacccttcgatggatccccagaggatgggtgccttggtc
gagtcacaggagggcgatggcaaaccaggtccacagcaggctgggcaaggtcaggcatca
agcagctcaggacagagttatcctgagccgccaccaccatattaccatggtggtcagtat
cccccctactatccaccttatggcggttacatgcccccacctcgcatgccataccagcag
ccaccacagtacccagcttatcaacctatgctggcaccaccagcacagtcgcaagctagc
tcattgcaacaaccagcaccggcaacgcagcagctgggtcaaggccctcagcaacagaca
acccagaacggaatgacttaa
DBGET
integrated database retrieval system