Oryza sativa japonica (Japanese rice) (RefSeq): 4340850
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Entry
4340850 CDS
T01015
Name
(RefSeq) protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5
KO
K12199
vacuolar protein sorting-associated protein VTA1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
4340850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4340850
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
4340850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vta1
Vta1_C
Motif
Other DBs
NCBI-GeneID:
4340850
NCBI-ProteinID:
XP_015644354
UniProt:
Q5Z4L5
A0A0N7KLZ9
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All DBs
Position
6:11712576..11717048
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AA seq
488 aa
AA seq
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MGSDAEPAKGLLPYLQRADELQKHEPLVAYYCRLYAMEKGMRIPQKERTKTTNSLLISLM
NQLEKDKKSLTLGSDDHLHVEGFALNVFAKADKQDRAGRADINTAKTFYAASIFFEILNQ
FGELQTDVEQKQKYAIWKAAEIRKALKEGRRPEAGPPGGDKDEAPDSTTTNSHLTDMGRS
QSFGSGQHGNEASSQHVDQDFSRRDSFSAVQPGNNALRHSTEKFNDHVSAQSPYSPPPPQ
SQTPPQSQFSSPAQSSYSSPSYQGTDYPSSDVHKPPHGYSSAPYTSTDYPTNEVHKPPSN
YSSPPYTRTDYPSSDSYNPQSNDKPDIPTYPHTYHQPPYTIEPQHTSQNYYSTETPAAPY
NYSNFQSYPSFQDSSVPSVPTHQSSFYPASDGTSAVSYSPSGSNHPAPTQYHPSADTTTH
QVTPPAIAPPASQYKYDSSYQPEVEKIAEAHKAARFAVGALAFDDVSVAVDHLKRALDLL
TNPSAETH
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgacgcggagccggccaaggggctgctgccctacctgcagcgcgccgacgag
ctgcagaagcacgagccgctcgtcgcctactactgtcggctctacgcgatggagaagggg
atgagaattccgcagaaggagcgcaccaagaccacaaactccctcctcatctctctcatg
aaccagctggagaaggataagaagtcattgactttggggtctgatgaccatcttcatgta
gaggggtttgcattgaatgtctttgctaaagcagacaaacaggatcgtgctggacgagcg
gacataaacactgcaaaaaccttctatgctgccagcatcttctttgagatcctcaaccaa
tttggtgagcttcagactgatgttgagcagaaacagaaatatgccatctggaaggctgct
gaaataagaaaagctctcaaagaaggacggaggcctgaagctggtcctcctggtggggac
aaagatgaagcacctgacagcaccaccacaaattcccatctaacggatatggggcgcagc
caatcctttggcagtgggcagcatgggaacgaagcatcatctcagcatgtagatcaggat
tttagcaggagggatagcttctctgcggtccaaccaggaaataatgcactccggcacagt
acagagaagttcaatgaccatgtctctgcccagtcaccttattcaccaccacccccacaa
tcccagacgcccccacaatcccagttttcatctcctgcacagtcatcttattcctctccg
tcatatcaaggaacagattacccttcttctgatgttcacaaaccaccccacggttattca
tccgccccatatacaagcacagactaccctaccaatgaggtccacaaaccaccatccaat
tattcctcaccaccgtacacaagaacagactacccttccagtgatagctacaatccccag
agcaatgataaaccagatatccctacttatcctcacacataccaccagccaccctacaca
attgaaccgcagcacacatctcaaaactactactctacagaaaccccagctgctccgtat
aactactctaattttcagtcctatccaagctttcaggacagctcggtaccttctgtccca
actcatcagtcttcgttctatcctgctagtgatggtacaagcgctgtatcatactctcct
tctggatcgaaccatcctgcaccaacacaataccacccgagtgctgatactactacgcat
caagttactccccctgctatcgcaccaccggctagccaatacaagtatgatagcagttac
cagccagaagttgaaaagattgccgaggctcacaaggcagcaagatttgcagttggtgcc
ctcgcatttgacgacgtgtcggtcgctgttgatcacctgaagcgcgcgctggatcttctg
acgaacccttccgccgaaactcattag
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