Oryza sativa japonica (Japanese rice) (RefSeq): 4341492
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Entry
4341492 CDS
T01015
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4341492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4341492
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
4341492
Complex C
U5 SnRNP specific factors
4341492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
4341492
NCBI-ProteinID:
XP_015643866
UniProt:
Q69V60
A0A0P0WYL8
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All DBs
Position
6:complement(24206692..24212569)
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AA seq
997 aa
AA seq
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MDDSLYDEFGNYIGPELADSDADDSDADASPSPSPSRSPSPSARSPSGSPSRPAALMDVD
GGDDDDDADPSQSAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQPLEQPIVAPPRVVRF
EVGTRAEATSTYATTDFLLGLAANPALVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDS
EGERHVRFTDTRVDEQERRVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAAL
RIADGAVLVVDAAEGVMVNTERAIRHATQERLPIVVVINKVDRLITELKLPPNDAYFKLR
HTLEAINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYLKIHGIQFDH
EKFASRLWGDLYYHPDTRTFKKKPPKEGANRSFVEFVLEPLYKIYSQVVGESKGKVEATL
SELGVTLSNAAYKLNVRPLLRLACRSIFGTSTGFTDMLVKHIPSVKDAAPRKIEHIYTGP
QDSTIVDAMKKCDPHAPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSP
DDEEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMKMDEDVYI
FRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELY
LDSIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGL
AEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPEKQGPNILLDDTLSVEVDK
NLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVV
YSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLP
VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVK
TRRRKGMSEDVSINKFFDEAMMNELAQQAADLHLQMM
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggcaactacatcggcccggagctcgccgactcc
gacgccgatgactccgacgcggacgcctccccgtccccctccccgtcccgctccccttcc
ccctccgcgcgctccccgtcgggctccccctcccgccccgccgctctcatggacgtcgac
ggcggcgacgacgacgacgacgccgacccgtcccagagcgccgtcgtcctcgccgaggac
aagaagtactaccccaccgccgaggaggtgtacgggcccggcgtggaggcgctcgtcatg
gacgaggatgagcagccgctagagcagcccatcgtcgcgcccccacgcgtcgtgaggttc
gaggtcggcacccgcgcggaggccacctccacctacgccaccaccgacttcctcctcggc
ctcgccgccaacccggcgctggtgcgcaacgtcgcgctcgtgggccacctgcagcacggg
aagacggtgttcatggacatgctcgtggagcagacccacgaggtggacaccttcgactcc
gagggcgagcgccatgtgaggttcaccgacacccgggtggatgagcaggagcggcgggtg
tccatcaaggccgtgcccatgtcccttgtgcttgagggagggaatggcaagtcatacctg
tgcaatatcatggacacacctgggcatgtcaatttttccgatgagatgactgccgcgttg
cggatcgctgatggggctgtgcttgttgtcgatgctgccgagggtgttatggtaaataca
gagagggcgattcgtcacgcaacacaagaaagactccccattgttgtcgtgattaacaag
gttgatagattgattacagagctaaagctgccacctaatgatgcatatttcaagctacgg
catacactggaggcgatcaatgatctcatctcgtcttgttctaccacagtaggtggcact
caactggttgatcctgctgctggaaatgtttgttttgcaagtggttctgcaggctggtct
tttaccttgcaatcttttgctcatctttatttaaagatccatgggattcaatttgatcat
gagaaatttgcatcgcgtctatggggagacctatattatcaccctgacactagaaccttc
aaaaagaagcctccaaaggaaggagctaatagatcatttgttgagtttgtccttgaacct
ttgtacaaaatatatagtcaggttgttggggagtcaaagggtaaggttgaagcaactctt
tctgagctgggtgtgacgctgagcaatgcagcttataagcttaatgttaggcctttgctg
agattagcttgtcgctcaattttcgggacttctactggctttactgacatgctagtgaaa
cacataccctctgtcaaggatgctgctccaaggaagatagaacacatatacactggtcca
caagattccactattgtggatgctatgaaaaaatgtgatccacatgcgccccttatggtt
aatgttacaaagttgtatcctaagtctgactgtagtgtctttgatgcctttggacgagtt
tatagtggcacaatacagactgggcaaactgtgcgtgttcttggagaaggctattctcct
gatgatgaagaagatatgactgtgaaagaggttactaagttgtgggtgtatcaggcacgg
taccgtgttccaattagtaaagcccctgctggttcttgggttcttattgaaggtgtagat
gcatcaattatgaaaactgcaactatatgtcctatgaagatggatgaagatgtctacata
tttagacctctacgtttcaatactctacctgtcgtgaaaatagcagctgagcctctaaac
ccaagtgagctccctaagatggtggaaggtcttcgtaaaatcagtaagagttatcctctt
gctgttactaaggtggaagagtctggagaacacactatccttgggactggtgagctttat
ctagattctataatgaaggacctcagagagctttactctgaggtagaagtgaaggttgca
gatccagtcgtgacattttgtgaaacagttgttgatacttcttcgatgaaatgctttgct
gaaacacccaacaagaggaacaaaattaccatggttgctgaaccattggaaaagggcttg
gctgaagatattgagaacggccttgttagcctggactcaaggcaaaaggaaatcactgac
ttctttcgtcaacgctaccagtgggatgtgctagcagcaaggtcaatatgggcttttggg
cctgaaaagcagggtcctaacattctcttagatgacaccctttcagtcgaggtggataaa
aacttgctcaatgcagtcaaagattcaattgttcaagggtttcaatggggtgctagagaa
ggtccgctgtgtgatgaaccaattagaaatgtgaaattcaagatcttaaatgcaaacata
gctcctgaaccgttgcaccgtggtggtggtcagataattccaacagctcgtcgtgtggtt
tactcagcgttcctaatggctaatccacgccttatggagcctgtatattatattgagatc
caaacaccaattgactgtgtctctgccatatatacggtgctatcccgtcgtcgagggcat
gtaacagcggatgtacccaaaccaggaactccaatctatgttgttaaggcatttttacct
gttatagagtcatttggatttgagaccgacctgaggtaccatacacagggacaggccttt
tgcctatcagtgttcgatcactgggctattgttcctggtgaccctttagacaagaatatt
gtcctccggcctctggaaccagcaccaatacagcatcttgctcgtgagtttatggtgaag
actaggcgaaggaagggcatgagtgaggatgtgagcatcaacaagttctttgatgaggcc
atgatgaacgagctggcgcagcaggctgctgatctccatcttcaaatgatgtag
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