Oryza sativa japonica (Japanese rice) (RefSeq): 4341584
Help
Entry
4341584 CDS
T01015
Name
(RefSeq) tryptophan synthase beta chain 2 isoform X1
KO
K06001
tryptophan synthase beta chain [EC:
4.2.1.20
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa00260
Glycine, serine and threonine metabolism
osa00400
Phenylalanine, tyrosine and tryptophan biosynthesis
osa01100
Metabolic pathways
osa01110
Biosynthesis of secondary metabolites
osa01230
Biosynthesis of amino acids
Module
osa_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
4341584
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
4341584
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
4341584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALP
Motif
Other DBs
NCBI-GeneID:
4341584
NCBI-ProteinID:
XP_015643991
UniProt:
Q67VM1
A0A0P0WYX1
LinkDB
All DBs
Position
6:complement(25590291..25594483)
Genome browser
AA seq
487 aa
AA seq
DB search
MATTASVRPPLLRQAAGSEKASLLCKPKQRASVRRRSFTARASSNPVSIPKQWYNLVADL
PVKPPPPLHPQTHQPLNPSDLSPLFPDELIRQEVTEERFIDIPEEVAEVYKLWRPTPLIR
ARRLEKLLGTPAKIYYKYEGTSPAGSHKPNTAVPQAWYNAAAGVRSVVTETGAGQWGSAL
SFASSLFGLTCEVWQVRASYDQKPYRRLMMETWGATVHPSPSAATESGRRILERDPASPG
SLGIAISEAVEVAARDADTKYCLGSVLNHVLLHQTVIGEECLEQLAAAGDVPDVVIGCTG
GGSNFGGLVFPFMREKLAGRMSPAFKAVEPAACPTLTKGVYAYDFGDTAGLTPLMKMHTL
GHGFVPDPIHAGGLRYHGMAPLISHVYELGFMEAIAIQQTECFDAALKFARTEGIIPAPE
PTHAIAAAIREAMECKRTGEKKVILMAMCGHGHFDLASYEKYLRGDMVDLSHSDEKLQEA
LAAVPKI
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaccgcctccgtccgacctcccctgctccgacaagcagcaggttcagaaaaa
gcctcactcctttgcaaaccaaagcagagagcttctgtcagaagaagaagcttcactgcc
agggccagctcgaatcctgtgagcatcccgaagcaatggtacaacctcgtcgccgacctg
ccggtgaagccaccgccgccgctgcacccgcagacgcaccagccactgaaccctagtgac
ctgtcccctctcttccccgacgagctgatcaggcaggaggtgaccgaggagcggttcatc
gacatcccggaggaggtcgccgaggtttacaagctctggcgcccgacgccgctgatcagg
gcgaggaggctggagaagctgctgggcacgccggcgaagatctactacaagtacgagggg
acgagcccggcggggtcgcacaagccgaacacggcggtgccgcaggcgtggtacaacgcc
gccgccggggtgaggagcgtggtgacggagaccggcgccgggcagtggggcagcgcgctg
tcgttcgcgagcagcctgttcgggctcacctgcgaggtgtggcaggtgcgcgcgtcgtac
gaccagaagccgtaccggcggctgatgatggagacgtggggcgccacggtgcacccgtcg
ccgtcggcggcgacggagtcggggaggaggatcctggaacgcgacccggcgagcccgggc
agcctcgggatcgccatctcggaggcggtggaggtggcggcgagggacgccgacaccaag
tactgcctcggcagcgtgctcaaccacgtgctgctccaccagacggtgattggggaggag
tgcctggagcagctggcggccgccggcgacgtccccgacgtcgtcatcggctgcactggc
ggcgggtccaacttcggcgggctggtgttcccgttcatgcgcgagaagctcgccggcagg
atgagcccggcgttcaaggccgtcgagccggcggcgtgcccgacgctcaccaagggcgtc
tacgcctacgacttcggcgacaccgccggcctcacgccgctcatgaagatgcacaccctc
ggccatggattcgtccccgaccccatccatgcaggagggcttcgctaccatggaatggcg
ccactaatctcccatgtgtatgagcttggattcatggaagccattgccatccaacaaact
gaatgcttcgatgctgcgttgaaatttgcgcggacggaggggatcatcccggcgccggag
ccgacgcacgcgatcgcggcggcgatcagggaggcgatggagtgcaagaggacgggggag
aagaaggtgatcctgatggccatgtgcgggcacggccacttcgacctggcgtcctacgag
aagtacctgaggggcgacatggtcgacctctcccactccgacgagaagctgcaggaagcc
ctcgccgccgtccccaaaatctga
Oryza sativa japonica (Japanese rice) (RefSeq): 4344612
Help
Entry
4344612 CDS
T01015
Name
(RefSeq) tryptophan synthase beta chain 1
KO
K01696
tryptophan synthase beta chain [EC:
4.2.1.20
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa00260
Glycine, serine and threonine metabolism
osa00400
Phenylalanine, tyrosine and tryptophan biosynthesis
osa01100
Metabolic pathways
osa01110
Biosynthesis of secondary metabolites
osa01230
Biosynthesis of amino acids
Module
osa_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
4344612
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
4344612
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
4344612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALP
Motif
Other DBs
NCBI-GeneID:
4344612
NCBI-ProteinID:
XP_015650592
UniProt:
Q6YYB9
A3BPF1
LinkDB
All DBs
Position
8:2029737..2033085
Genome browser
AA seq
471 aa
AA seq
DB search
MAAAVGNPNAAAAASISASRVGAGALRAGGLRVAAGRRGAGAVVAAAMRPAKAVASPAKE
AAGEVNGAASGGFARPDAFGRFGKFGGKYVPETLMHALTELEAAFHALAGDEDFQKELDG
ILKDYVGRETPLYFAERLTEHYKRADGTGPMIYLKREDLNHTGAHKINNAVAQVLLAKRL
GKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHS
GTATLKDATSEAIRDWVTNVENTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMEKWG
GKPDVLVACVGGGSNAMGLFHEFVDDQDIRMIGVEAAGYGVDTDKHAATLTKGEVGVLHG
SLSYVLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSR
LEGIIPALETSHALAYLEKLCPTLPDGVRVVVNCSGRGDKDVHTASKYLDV
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgtcgggaaccctaacgcggccgccgctgcgtcgatctcggcgtcgagg
gtcggtgcgggggcgttgcgcgcggggggcttgagggtggcggcggggaggaggggagcg
ggggctgtggtggcggcggcaatgcggccggcgaaggcggtggcgtcgccggcgaaggag
gcggccggggaggtgaacggggcggcgtcgggggggttcgcgaggcccgacgcgttcggg
aggttcgggaagttcgggggcaagtacgtgcccgagacgctgatgcatgcgctcaccgag
ctcgaggccgcgttccatgccctcgccggcgacgaagatttccagaaagaacttgatggt
attctcaaggattacgtcggccgggagaccccgctgtactttgcggagcgattgactgag
cactacaagcgcgctgatggcacaggccccatgatttacctcaagagggaggatcttaac
cacactggcgcccacaagatcaacaatgctgtcgctcaagtcttgcttgccaagcggctt
gggaaggaacgtatcatcgccgagactggcgccggccagcacggtgttgccactgccacg
gtgtgcgcgaggtttgggctgcagtgcatcatctacatgggtgctcaggatatggagagg
caggcacttaatgttttcaggatgaagcttcttggagcagaggtgagggcagtacattct
gggacagcaactttgaaggatgccacctcggaggccatccgtgactgggtcaccaatgtt
gagaacactcactacattttgggatcagttgctggtccgcatccatacccgatgatggtg
agagagttccataaggtgattggcaaggagacccgtagacaggccatggagaagtggggt
ggcaagcctgatgtcttggttgcttgtgttggtggtggatcaaacgccatgggtctcttc
catgagttcgttgatgatcaagatataagaatgattggagtggaggctgctggctatggt
gtagacactgacaaacatgctgccactttgacaaagggagaagtgggagttctccatgga
tcattgagctatgtgttgcaggatgatgatggacaagttattgaaccccactccattagt
gctgggctggactaccctggtgttgggcctgagcatagctttttgaaggatattggacgt
gctgaatatgacagcgtgacagatcaggaggcactggatgctttcaagcgcgtctctcgg
ctggagggcatcatccctgctctggagacgtcccatgcgctcgcctacctggagaagctc
tgcccaacgctgcccgacggcgtgagggtggtggtgaactgcagtggaagaggagacaag
gatgtccacacagccagcaagtaccttgatgtctga
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integrated database retrieval system