KEGG   Oryza sativa japonica (Japanese rice): 4341679
Entry
4341679           CDS       T01015                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4341679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4341679
   03036 Chromosome and associated proteins [BR:osa03036]
    4341679
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     4341679
   Coactivators
    SAGA/TFTC/STAGA complex
     4341679
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     4341679
    STAGA complex
     4341679
    TFTC complex
     4341679
    SAGA complex
     4341679
    SLIK complex
     4341679
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Nup160 RecX_HTH3 WD40_like Cytochrom_D1 PALB2_WD40
Other DBs
NCBI-GeneID: 4341679
NCBI-ProteinID: XP_015644092
UniProt: A0A0P0WZB6 Q0DAJ2
LinkDB
Position
6:join(27393342..27393475,27394336..27394417,27394945..27395023,27395123..27395220,27395348..27395404,27395988..27396075,27396185..27396294,27396477..27396578,27396833..27396984,27397785..27397895,27397971..27398040,27398131..27398170,27398584..27398748,27398850..27398926,27400246..27400362,27400501..27400766,27401286..27401381,27401465..27401531,27401624..27401677)
AA seq 654 aa
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRISTSSVSDVALARSENDPARYYDGYSKL
RTWAYSSLDQYKHELLRVLYPVFIHSFMDLVAEGHTQEARSFFHTFHEDHELMHSRDLQK
LEGILSPSHLEEMELARSLRKNQFRIKLCEYSYELLLQYLQKTQALVVLGIINERTTFDV
SPGQPSLISDDTDVVALVGTKKDLAKQINLKEVHWGLLEDSVEERMEKTLLESDKTEAES
KDADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATGKTNKSETSIVSVAPRVKPELTLPV
IPVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSV
KVWDMSKIGQPPKTSSPQGENGLSQGERTSASDYGKRPYTLFQGHSGPVYSAAFSPFGDF
LLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKI
QPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAM
SPDGRYMASGDEDGTIMMWDLSSGRCVSPLGGHSSCVWSLAYSCEGALLASGSADCTVKL
WDVASSTKVLKTDDTSTNRLRMLKTLRTKSTPVYTLRFSRRNLLFAAGALSLGS
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcggaaggggttccgc
ctcaccgagctcgcgttgcaggaggagcgcaaccgcatctccacctcctccgtctccgac
gtcgcgctcgccaggtcggaaaatgatccggcaagatactatgatggttatagtaaacta
agaacatgggcatacagttctctcgatcagtacaagcatgaattactccgtgtcctttac
ccagtgtttatccattccttcatggatctagtggcagagggacatacacaggaagctcgg
tcctttttccacacgttccatgaagaccatgaactgatgcattctagggatctccagaaa
ctggaaggcattctttctccttcacatttggaggaaatggaactggccagatctttaagg
aaaaatcaattcagaattaagttatgtgagtattcatatgagttactcctccagtatctc
cagaaaacacaagctcttgtggttcttggaataataaatgaacgcacaacttttgacgta
tcccctggtcagccatctttaatctctgatgacacggatgttgttgctctagttggaaca
aagaaggatttggcaaaacaaataaatctgaaggaggtgcattgggggttgcttgaagat
tcagttgaagagcgcatggagaaaacacttttagaatcagataaaactgaagcagaaagc
aaggatgcagatgccgaagataacaataagagaaaatcttcggaaggtggaaagcaggga
ggttctgttaaaaaggtcaaaaaagataagattgcaggagccacagggaaaaccaataaa
tctgaaacaagcatagtttcggtggcacctcgtgtgaaaccagagcttacacttccagtg
attcctgttgaagtcgagcagtcaattcttgaggatttgcgaaaccgtgcacagttgaat
agcctggcattgccatctgttagcttctacacattccttaatactcataatgggctaaat
tgctcatcaatttcacatgacggctctttggttgtgggtggattctctgactcatcagtg
aaggtttgggatatgtcaaagattggccaaccgccgaaaacatctagtccacaaggagag
aatggactttcccagggtgagcgcacatcagcatcagattatggaaaaagaccttataca
ttattccaaggtcattctggaccagtttattccgctgcatttagcccattcggagatttt
ctcttgtcatcatcctcagactcaacaattcgactatggagtaccaagttgaatgctaat
cttgtttgctacaaaggacacaactaccctgtttgggatgtacaatttagcccagttggt
cattattttgctagcgcttctcatgacaggactgctagaatttggtcaatggataaaatc
cagcctttgcggataatggctggacatctctctgatgttgattgtgtgcagtggcatgtt
aactgtaactacattgccaccggctctagtgacaaaactgtaagattatgggatgttcaa
actggtgaatgtatacggatgttcattggccataggagtatggttttatcattggctatg
tctcctgatgggcgatacatggcctccggagatgaagatggaaccatcatgatgtgggat
ctctcttctggtcggtgcgtttcaccacttgggggacacagctcttgtgtgtggtcactt
gcttacagttgtgaaggggcattgcttgcatctggatcagccgactgcactgtgaaactc
tgggatgttgcctccagcacgaaggtccttaagacagatgatacctcaactaaccggctg
aggatgctcaaaactctccgtacaaaatcaactcctgtttatactctgcggttttctcgg
cgaaatcttttatttgcggctggtgctctctcacttggctcctaa

KEGG   Oryza sativa japonica (Japanese rice): 4342682
Entry
4342682           CDS       T01015                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X2
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4342682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4342682
   03036 Chromosome and associated proteins [BR:osa03036]
    4342682
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     4342682
   Coactivators
    SAGA/TFTC/STAGA complex
     4342682
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     4342682
    STAGA complex
     4342682
    TFTC complex
     4342682
    SAGA complex
     4342682
    SLIK complex
     4342682
SSDB
Motif
Pfam: WD40 TFIID_NTD2 ANAPC4_WD40 NBCH_WD40 Nup160 RecX_HTH3 Cytochrom_D1 WD40_like WEF-hand
Other DBs
NCBI-GeneID: 4342682
NCBI-ProteinID: XP_015646527
LinkDB
Position
7:join(5735995..5736164,5736723..5736804,5737325..5737403,5737521..5737612,5737740..5737796,5737964..5738051,5738168..5738277,5738468..5738566,5738952..5739103,5740354..5740464,5740549..5740618,5740710..5740749,5741099..5741263,5741363..5741439,5741718..5741834,5741969..5742234,5743203..5743298,5743377..5743452,5743550..5743603)
AA seq 666 aa
MEDEEMEKKVHQYLQRKGFRVAGLALLEDRTRLSATTTTTTTASSSSHSLSDAALSRSEN
DPARYYDGYSKLRTWAYSYLDHYKHELLRILYPLFFHCFMDLVAEGHTQEACSFFHTFRE
DHEHSRDLKKLESILSPLHLEQMEVARSLRQNKFRIKLCEYSYELLLQYLHKTQALVVLG
IINERIDFQVSPGQSPLIIDDSDAVVLIGTSKDLTKQINQKEVHWGILEDSLEERMEKAI
SDSDKTEIESKDADTEDNKKRSSEGGKQGGSHKKIKKDKFVGTTGKNMKSETSMVSIAPR
VKPELTLPMTSVEVEQSILEDLRNRAQLNSLSLPSVSFYTFLNTHNGLNCSSISHDGSLV
VGGFADSSVKVWDMSKIGQPSKASCSQGENGPSQIERVSTSDEARKSCTLFQGHSGPVYS
AMFSPIGDFLLSSSADSTIRLWNTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRT
ARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGH
RSMVLSLAMSPDGRYMASGDEDGTIMMWDISSGRCVSPLVGHNSCVWSLAYSCEGALLAS
GSADCTVKLWDVASSTKTLKMDDTKGGSANRLRMLKALPTKSTPVYTLQFSRRNLLFAAG
APSLGS
NT seq 2001 nt   +upstreamnt  +downstreamnt
atggaggacgaggagatggagaagaaggtgcaccagtacctgcagcggaagggcttccgc
gtggcggggctcgcgctgctcgaggaccgcacccgcctctccgccaccaccaccaccacc
accaccgcctcctcctcctcccactccctctccgacgccgcgctctccaggtcagaaaac
gatccagcgaggtactatgatggctatagtaaactaagaacatgggcatacagttatctt
gatcactacaagcatgaattactccgcattctttatccactatttttccactgcttcatg
gatttagtggcagagggacatacacaggaagcttgctcatttttccacacatttcgtgaa
gaccatgaacactcgagggatctcaagaagctggaaagcatcctttctcctttacatttg
gaacaaatggaagtggctcgatctttaaggcagaataaattcagaattaagctatgtgag
tattcatatgaattgcttctccagtatctccacaaaacacaagctcttgtggtgcttgga
ataatcaatgaacgcatagattttcaagtatcccctgggcagtctccattaatcattgat
gactcggatgctgttgttctgattggaactagcaaggacttgacaaaacagataaatcag
aaggaggtgcattgggggatacttgaagattcacttgaagaacgtatggagaaggcaatt
tcagattctgataaaactgaaatagaaagcaaggatgcagacacagaagacaacaagaaa
agatcctcagaaggtggaaagcagggtggctcacataaaaagatcaaaaaggacaagttt
gtaggaaccacagggaaaaacatgaaatctgaaactagcatggtttctatagcaccacga
gttaaaccagagctaacgcttccaatgacgtctgttgaagttgagcagtcaattcttgag
gacttgcgaaaccgtgcacaattgaatagcttgtcattgccatctgttagcttctataca
ttccttaatacacataatgggttaaattgctcatcgatttcgcatgatggttcattggtc
gttggtggattcgctgattcatcagtgaaggtttgggatatgtcaaagattggccagcct
tccaaagcatcttgttcacaaggcgagaatggaccctcccagattgagcgggtatcgaca
tcagatgaagcgcgtaaatcctgtacattattccaaggtcattctggaccagtttattct
gccatgtttagcccaattggggacttcctcttgtcatcatctgcagactcaacaattcgc
ttatggaacaccaagttgaatgctaatcttgtttgctacaaaggacacaactaccctgtt
tgggatgtccaatttagtccagttggacattactttgctagtgcttcgcatgacaggact
gctagaatctggtccatggataaaatccagcctttgagaataatggctgggcatttatct
gatgttgattgtgtgcaatggcatgtcaactgcaactacattgccactggctctagtgac
aaaacagtaagactatgggatgttcaaacaggtgaatgtataaggatgtttattggccat
aggagtatggttttatcattggcaatgtctcctgatgggcgatacatggcctctggagat
gaagatggaacaatcatgatgtgggatatatcttctggtcgttgtgtttcaccgctagtg
ggacataactcttgtgtgtggtcgcttgcttacagctgtgaaggggcattacttgcatct
ggatcagccgactgcactgtaaaactatgggatgtcgcctccagcactaagactcttaag
atggatgataccaaaggtggttcagctaaccgactgaggatgctgaaagccctccctaca
aaatcaacccctgtttacactctgcagttttctcggaggaatcttttatttgcggctggt
gctccctcacttggctcctaa

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