Oryza sativa japonica (Japanese rice): 4344412
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Entry
4344412 CDS
T01015
Name
(RefSeq) branchpoint-bridging protein isoform X1
KO
K13095
splicing factor 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4344412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4344412
Spliceosome [BR:
osa03041
]
Complex A
Other components
Complex A specific factors
4344412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
KH_1
Motif
Other DBs
NCBI-GeneID:
4344412
NCBI-ProteinID:
XP_015649670
LinkDB
All DBs
Position
8:join(58823..59095,59557..59682,59903..59948,60082..60164,60545..60622,60725..60778,60898..61032,61116..62585)
Genome browser
AA seq
754 aa
AA seq
DB search
MAAKSKPSKISIFGAKAGFLIPKNKLPGSLIARSSSNAKNESPTASSSAAASSNSKSKED
NNNNSTQRNTKWGPDLTLDPAVRKSRASAYQSRLEQITKELISGSLEISENEGSISTARG
SNSDGANNEKENVQGMVELLELERREIIGEILHLNPGYKAPEDYKPLLKETKIPLPTKTY
PGHNIIGVLMGPESNAQKRLQEETGAKIRVYGIKRTNGEKSEIHQADIGEVQGAYEDLYI
NVSADTHDKVDAATALIELLLTPVSINSRAIEANATVSSAVSSGGADLADLRQVQNNSSQ
PGFLQYQSHDAHWLSTSQANAPPIPSSEPPPSALPNNSFPLQPPGGSLSTLSYTGPPPLM
NIMPRNPLPIPGPQPLVSNAQQPPLQFQANPSIGSPFGRPPGIVSPQLTPSSTLPRSVRP
LQTPHASGGWLNFSSVPVQSQRPSPAFMPVRPPISVSPLVSSPQLEGAAVPSFPRQSNIS
TSYGTQHHPSGASFASSATMPSIPPGAPQLSPQGPSSMPVLSSPAGLTTQPPYPLPMQMR
PPMATPAQMRGPPSPFPQTGPTPGMPPAGGFGVPGSGNMTAMRPPRPSSGDFTFRPLVSA
SPTPELGASGSQVPLFHPGNQRPPMARVEGFQRPIDMGHQGRAYATGPPHPHQHPHPHAH
FGGGGFLPRNPAASVLQSAGTRGFVGAFPLPPAAVEAQRPFHVLAQAQQKPIYDPFVPSG
AVMSGGPGGGGGRKRKTEDDKAEYEDLMASVGVK
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaaatcgaaaccctccaagatctccattttcggggccaaagctggatttctc
atacccaagaacaagctccctggctcactcattgcccgttccagttccaacgccaagaat
gaatcacctactgcttcttcttctgctgctgcttcctccaactccaagtccaaggaagac
aacaacaacaactctactcaaagaaacactaaatggggcccggatctcaccctggatcct
gccgtcagaaaatccagagcttcggcctaccagagtcgactggagcaaattaccaaggag
ctgatatcgggatccctagagataagtgaaaatgaaggctcgatatctactgcaaggggc
tcaaactctgatggtgctaacaatgagaaagagaatgtgcagggaatggttgagctcttg
gaacttgaaagaagagaaattattggtgaaatactccatttaaatccaggatataaggct
cctgaagactacaagcctttactcaaggaaacaaaaatccctttgcctacaaaaacatat
ccagggcataatataattggagttcttatgggacctgagagcaatgcccagaagcgacta
caggaagaaaccggagctaaaatacgagtatatgggattaagagaaccaacggagagaag
agtgagattcaccaagcagacataggtgaagtgcaaggtgcttatgaagacctgtacata
aatgtctcagctgacactcatgacaaagtagatgctgcgactgcactgattgagctgctt
cttactcctgtctctataaattcaagggctattgaagcaaatgctactgtttcatcagca
gttagctcaggcggtgcagatttagctgacctgcggcaggtgcagaacaacagttctcag
ccaggttttcttcagtaccaatcacatgatgctcactggctatctacttcccaagccaat
gctccaccaattccttcctctgagcctccgccgagtgcattacctaacaattcttttccg
cttcagcctcctggcggttctttgagtacgctttcatacacaggaccaccacctcttatg
aatatcatgccaagaaacccattgcctattcctggacctcagccattggtgtcaaacgct
caacaacctccgcttcaattccaagcaaacccctcaattgggtctccctttggtagaccc
cctggaattgtaagcccgcaactaactccatcttccacattgccgcggtctgttagacct
cttcaaacaccccatgcatctggaggatggctaaatttttcttctgttccagtgcaatct
cagaggccttcaccagcttttatgccagtgagacctcctatttccgtgtctcctcttgtt
tcaagtccacagctggaaggtgccgctgttccatcgtttcctcgtcaatcaaatatctcc
acaagctatggcactcagcatcatccatcaggcgcaagctttgcatcttcagcaacaatg
ccttccatacctcctggtgccccccaattgtcacctcagggtccttcctcaatgccagtg
ctgtcgtctcctgctgggttaacaacacagccaccttatccgctgccgatgcaaatgcgt
cctcccatggcaacacctgctcaaatgagaggcccgccttcacctttccctcagactggg
ccaactcctggcatgccacctgctggcgggtttggtgtgcctggttctggaaacatgacc
gctatgaggccaccacgcccaagcagcggtgattttacctttcggcctcttgtgtcagct
tcaccaacaccagagcttggagcatcaggcagtcaagtgccattattccatcctggcaac
cagagaccacctatggcgcgagttgaaggtttccaaaggcctattgatatgggtcatcag
ggccgggcgtatgccactggtccaccgcatccacatcaacatccacatccacatgcacac
tttggtggtggaggcttcctcccaaggaatccagctgcatctgtgcttcaatcggcaggg
acaagggggtttgttggagctttccctctcccgccagcggcagttgaagcacaacggccg
tttcatgtgttggcacaagcacaacagaagccaatatacgatccatttgtgccgagtggt
gcagtaatgtcaggaggacctggaggtggaggaggaagaaaaaggaagacggaggatgac
aaggctgagtacgaggatctcatggcgtccgttggtgtcaagtga
Oryza sativa japonica (Japanese rice): 9268114
Help
Entry
9268114 CDS
T01015
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9268114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
9268114
Spliceosome [BR:
osa03041
]
Complex A
Other components
Complex A specific factors
9268114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
zf-CCHC
eIF3g
PHD_4
KH_PNO1_2nd
RRM_5
DUF8363
DUF6319
HMA_AllF_N
RRM_Nup35
RRM_10
Motif
Other DBs
NCBI-GeneID:
9268114
NCBI-ProteinID:
XP_015636258
LinkDB
All DBs
Position
4:19288465..19290840
Genome browser
AA seq
791 aa
AA seq
DB search
MASAETLARSPSREPSSDRPRADSSEPPRESSSEPHHHNGDGSGGAGGGGDSSSRRRRRS
RWEQSNDDSAANSGGEGGGGGGGGGGRKRKSRWAEEEPRPIIALPDFMKDFAADLDPEVH
NLNARLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTREYRARERLNRERQEI
ISQLIRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAK
IVIRGKGSVKEGKLLQKRDMKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLTPVDEVL
NEHKRQQLRELAALNGTIRDDEFCRTCGEPGHRQYACPNRTSTFKSEVQCKICGDGGHPT
IDCPVKGTTGKKMDDEYQNFLNELGGSAPESVTKSSGPMLALTGSGGSGGSSGGVGAGSG
SNPPWAAGGGAAASGANGIKKEYDETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRD
RITGQSKGYGFVKYSDVSQANAAIAAMNGYHLEGRVIAVRVAGKPPQPAVPPGPPAVPAP
PTYPPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPPPPGSSMYNPPPPA
PGQATPPPYGVQYAPPPAPIPPPGTAPSTDGAQNYPPGVTPPSSGAPTQPVPAPVYGTSG
APNAPPMYPPPPYGYASYYPSVTPVQPPPPPPPAGADPSQSLANAPWATHSAPPPPPSGA
DPSQSIANAPWATHSAPPPPPATADHSQSIASAPWATHNAPPPPPPPSSIEQPPATYGAD
AEYDKFMSEMK
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccgaaaccctagcccgctccccgtcgcgggagccgtcctccgaccgtccc
cgcgccgactcctccgagcccccgcgcgagtcctcctccgagccgcaccaccacaacggc
gacgggagcggcggcgcgggagggggaggcgactcgtcctcccgccgccgccgccgaagc
cggtgggagcagtcgaacgacgattcggccgctaactccggcggggagggcggcggcggg
ggcggaggcggaggggggcggaagcgcaagtcgcggtgggccgaggaggagccccgcccc
atcatcgcgctcccggacttcatgaaggacttcgccgccgatctggacccggaggtgcac
aacctcaacgcgcgcctcctcgagatctcccgcatgctccagtcgggcctccccctcgac
gaccgccccgagggcgcgcgctcgccctcccccgagcccgtctacgacaacctcggcatc
cgcatcaacacccgcgagtaccgcgccagggagcgcctcaaccgcgagcgccaggagatc
atttcccagctcatccgccgcaacccggccttcaagccccccgccgattaccgcccgccc
aagcttcagaagaagctctacatccccatgaaggagttccccgggtacaacttcatcggc
cttatcatcggcccgcgcggtaacacgcagaagcgcatggagaaggagacgggcgccaag
atcgtaatccgagggaagggcagcgtcaaggaagggaagctgcttcagaagagggacatg
aagccggatcccagcgagaacgaggacctccatgtgcttgttgaggctgagacgcaggag
gcattggacgccgccgcgggtatggtggagaagctacttaccccggtggatgaggttctg
aacgagcacaagcggcagcagctgcgggagctcgcggcactgaacgggacaattagggac
gatgaattttgtaggacttgtggggagccaggtcaccggcagtacgcttgccctaacagg
acgtcaacattcaagagcgaggtgcagtgcaagatctgcggggatggcgggcatccaaca
attgattgtcctgtcaagggcactactgggaagaaaatggatgatgagtaccagaacttc
ttgaatgagcttggggggagcgcccctgagtcggtgacaaagtctagtggtccaatgttg
gctcttacagggagcggcgggagtggtggcagcagcggcggcgttggtgctggtagtggt
agtaacccgccatgggctgcaggtggtggtgctgctgcctcaggggcaaatgggatcaag
aaggagtatgatgagaccaatctgtacattgggtacttgccacctaccctggatgattca
gggctgataggcctgttttcacaatttggagagattgtcatggcgaaggttatcagagat
cgcatcactgggcagagcaaaggatacggttttgtgaagtattcggatgtatcccaggct
aacgcggcaatcgctgcgatgaacggttaccatcttgaagggagagtgattgctgttaga
gttgcaggaaagccgccacagccagctgttcctcctggcccacctgcagtgccagcacca
ccaacatatcctcctgcagatcctgctgctggtggctacacctcacagccctacatggga
gcaccaccgccaccacctccagggagctatgctccagttccttgggggcaaccgccacca
tatgcttcataccctccgccgccaccaggttctagcatgtacaatcctccacctcctgca
ccaggccaagctacaccacctccatatggtgtgcagtatgcaccaccaccagctccaatc
cctccaccaggcactgctccatcaactgatggggcgcagaactaccctcctggtgtaaca
ccaccaagttctggtgcacctactcagcctgtcccagctccagtatatggaacttccggc
gcaccaaatgcgccacctatgtaccctccacctccttatggttatgcctcttattatcca
tcggtgacaccagttcagccgccaccacctccaccacctgctggcgctgatccctcgcag
agccttgcaaatgcaccgtgggcaactcacagtgcaccacctccacctccttctggtgct
gatccgtcgcagagcatcgcaaatgcaccctgggcaactcacagtgcaccacctccacca
ccagctactgctgatcactcacagagcattgcaagtgcaccttgggccactcacaatgca
ccgcctccaccaccaccaccttccagcattgagcagcctcctgctacatatggtgctgat
gcagagtatgataagtttatgtcagagatgaagtga
DBGET
integrated database retrieval system
