Oryza sativa japonica (Japanese rice): 4344717
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Entry
4344717 CDS
T01015
Name
(RefSeq) THO complex subunit 7B isoform X1
KO
K13176
THO complex subunit 7
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4344717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4344717
03041 Spliceosome [BR:
osa03041
]
4344717
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
4344717
Spliceosome [BR:
osa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4344717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC7
ArsR
YwqH-like
APG6_N
TMEM120A-B
Motif
Other DBs
NCBI-GeneID:
4344717
NCBI-ProteinID:
XP_015648144
UniProt:
Q0J7V5
A0A0P0XBW1
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All DBs
Position
8:complement(join(3568598..3568732,3569124..3569717))
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AA seq
242 aa
AA seq
DB search
MLAKGRKVAGRGGDMSAHYAFGPQEDDAIIKHRLLTRTTTTRGEPPLKKLQKKFMSFATE
VEKDADNISDCERLYKAFLQEINTFELPLLKSKAVVDANLREKESFNELQDEIQRQILQA
QTDIEDLKKQLEQSKIERQHKEECEAIRKMISLQPPRSETEKLIADLEKEIANLEAENTA
CIRTLELRKKQFALLLHVVEELQISIDDEQRSIADELRAATEEQKMSIEEVSGGASDAMA
VD
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaagggaggaaagttgctggaaggggcggagacatgtctgcacactatgca
tttgggccgcaggaagatgatgcgattattaaacataggcttctgaccaggacaacaact
accaggggtgaaccaccacttaagaagcttcagaagaagttcatgtcctttgccactgag
gttgagaaggatgcagacaacataagtgactgtgagaggctgtacaaggcctttttacag
gaaattaatacttttgagctgcctcttcttaaaagcaaggctgtcgttgatgcaaacctt
agggagaaggagagcttcaacgagctgcaggatgagattcagcgacaaatcttgcaagct
cagactgatattgaggatctcaagaagcaactggaacagagcaaaattgagaggcagcac
aaagaggagtgcgaagcaatcagaaaaatgatttctttgcagcctccacgatcagaaaca
gaaaagctcattgcggatcttgagaaggagattgctaatttggaggctgagaatactgca
tgtataaggaccctggaactaaggaagaagcagtttgctcttcttcttcatgtggtcgag
gaactgcagatctcgatcgatgatgagcagaggagcatagcagatgagctgagagctgcc
actgaagagcagaagatgagcatagaggaagttagcggcggtgcttcagatgccatggct
gtagattga
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