Oryza sativa japonica (Japanese rice): 4345455
Help
Entry
4345455 CDS
T01015
Name
(RefSeq) serine/arginine-rich splicing factor SR45a isoform X1
KO
K12897
transformer-2 protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4345455
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
osa01009
]
4345455
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4345455
Protein phosphatases and associated proteins [BR:
osa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
4345455
Spliceosome [BR:
osa03041
]
Common components
Common spliceosomal components
SR proteins
4345455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
4345455
NCBI-ProteinID:
XP_015650398
UniProt:
A0A0P0XF46
Q6YW54
LinkDB
All DBs
Position
8:join(18327052..18327074,18327153..18327368,18327752..18327860,18327977..18328126,18329989..18330043,18330817..18331103)
Genome browser
AA seq
279 aa
AA seq
DB search
MSQSKEVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSRSPPPRRRSTSRS
PRPRRHGRSRSRSRDRSRSRSRDDDLRNPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSC
HVVLDPRTKESRGFAFVTMDSVDDARRCIKYLHRTVLEGRLVTVEKAKRTRERTPTPGKY
CGRRGSQRSSRSPSPYRSRRRERSRSRDRQRDRSRSRDRRRDRSRSRDRRRDRSRSRDRR
RDRSRSRDRRGSSPHDRDSHRRRGDRSRSPATNGNHKKD
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaatccaaggaagtgaggtacactgcacgttctattacgcctcctgcagataga
aatggcacttcaaagtcaaagtcacccactccagtgagacgcagtacctctaggtcacct
cctccaaagaagagtgattcaaggtctccacctccaaggaggcgcagtacttcaagatct
cctcgccctagaagacatggcagatcaaggtcaaggtcaagggataggagtcgctccagg
agccgagacgatgatttaagaaacccagggaataacctttatgtgactggattatccact
cgcgtaactgaagaagaccttgagaagttctttagtaaggagggaaaggttcaaagctgt
catgttgttcttgatcctcgtacgaaagaatctcgtgggtttgcctttgtaactatggat
tccgttgatgatgcaagacgttgcataaagtacctgcatcgcactgtacttgaaggtcgc
ctggtcactgtagaaaaagctaaaagaactcgggagagaactcctacacctggaaaatat
tgtggccgcagaggctctcaaagaagttccaggagcccatcaccttaccggtctcgcaga
agggagcgatctcgctcaagagatcgtcagagggaccgctcacgctccagggatcgccgc
agggaccgctctcgctcgagggatcgccgcagggaccgctctcgctcgagggatcgccgc
agggaccgctcgcgctcaagggatcgtcggggcagctctccacatgacagagattctcac
aggaggcgtggagacaggtccaggtcaccggctaccaacgggaaccacaaaaaggactag
DBGET
integrated database retrieval system
