KEGG   Oryza sativa japonica (Japanese rice): 4347482
Entry
4347482           CDS       T01015                                 
Symbol
TOP3B
Name
(RefSeq) DNA topoisomerase 3-beta
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4347482 (TOP3B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4347482 (TOP3B)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4347482 (TOP3B)
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     4347482 (TOP3B)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Topoisomerases
   4347482 (TOP3B)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     4347482 (TOP3B)
   FA (Fanconi anemia) pathway
     4347482 (TOP3B)
SSDB
Motif
Pfam: Topoisom_bac Toprim DUF5795
Other DBs
NCBI-GeneID: 4347482
NCBI-ProteinID: NP_001409731
LinkDB
Position
9:join(23780094..23780114,23780254..23780310,23781241..23781344,23787502..23787595,23788027..23788126,23788556..23788799,23788915..23789077,23789157..23789276,23789605..23789684,23790202..23790480,23790658..23790826,23790914..23791042,23791171..23791383,23792085..23792264,23792729..23793376)
AA seq 866 aa
MAPTVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHVL
SVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREGE
NICYEVIDCTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEIDL
KVGVAFTRFQTRYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTY
VIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASDGILKVTDISVKEECKARPPGLNTVNLL
KVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDV
RTLLDTGFVKPKQGHDAGDHPPITPMRLATEEALGTDAWRLYQYICQHFIGTVSPDCRYT
RTSIEFTSGGETFHCVGNRVTSKGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIYEGST
TPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTLIRGY
QCIDADLCLPDIRRFIEQQITLIAKGEADHLQVVQHVLQQFMKKYSYFVKKIENMDALFE
AQFSPLADSGRLLSKCGKCARYMKYISTQPMRLYCVTCEEVYYLPQNGSIKLYKEIICPL
DGFELLLFSMVGPDAKSFPLCPFCYNSPPFEGIDKLFGALKLDDTGKVGKGAGMPCFLCL
HPTCKQSMITQGVCACPECTGTLILDPVSAPKWRLYCNRCNCIVLLPHAAHKISTTDKKC
PTCESTIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGR
GRGRGSSRGRRGSSRHDDPKMSFRDF
NT seq 2601 nt   +upstreamnt  +downstreamnt
atggcgcccacggttctgatggtcgcggagaagcccagcatcgcgctctccatcgcctcc
gccctctccggcggccgcatgtctacaaggaagggaagtacagatgtccatgagtttgat
gggatgtttcagggttctcatgcatttttcaaagtgacatcagtcattggacatgtcttg
agtgtagattttccacctgcatatcagaattgggaagggactgatccaatggatctattt
gtggctccagttctgcgatctgaatgcaaccctaaggctcatatccgcaggcatctagct
caggaagctcgaggctgcacctacttggtactctggcttgattgtgaccgagaaggagaa
aacatatgctatgaagtaattgattgcactggaattcctaaaagtgaggttggcagaaga
attttccgagccaaattttcgtccgttactgagaaagatataatggatgctatgaataat
cttgttttgccaagtaaagatgaggcactagcagttgatgctcgccaagaaattgacttg
aaggtaggagtagcatttactcgatttcaaaccagatattttcaaggaaaatatggaaat
ctcgactcaagagtaatttcgtatggtccatgccaaacacctacacttggattctgtgta
caacgctatcagcagattaccacattcaaaccagagaaattttggtccttgaaaacttat
gttatcaaggatggtaatgaaattcagcttgaatgggataggaagaaactttttgatttt
gatgttactgtaatgttccaaaagatggtggccagtgatggtattttaaaagtaaccgac
atatcagtgaaggaagagtgcaaagcccgcccgcctggccttaatacagttaatttgctt
aaggttgcatcaagtgcactaggtattggacctcagacagcaatgcacttggcagaaagg
ctttatacccaaggattcatcagttatccacgtacagagagcactgcctatccttcatca
tttgattttagaagtgcactcgctgcacttgcacataatcctttgtggtccaatgatgtt
cggacgttactggacactgggtttgttaagcccaaacagggtcatgatgctggggaccat
cccccaataactccaatgagattggcaacagaagaagctttgggaactgatgcttggagg
ctgtaccagtacatttgtcagcattttattggcactgtcagtcctgattgtagatatacg
aggacttccattgagttcacttcaggtggagagactttccactgtgttggcaaccgggtc
acttctaaaggatttacttctattatgccatggctggctgtgagtgagaataatatccct
gcatataaaaagggcgatgctgttagcatccataaggttgacatatatgagggtagcacc
acacctcctgactaccttagtgagagtgaattgatctctctcatggagaagaatggcata
ggtacagatgcatcaattcctgtgcatgtaaacaacatctgcgagcgtaattatgttcag
gtgaattccggaagaagattagtaccaacacccctgggaactacattgataagagggtat
cagtgcattgatgctgatctgtgcttaccagatatccgaaggtttattgagcagcagatt
actctaattgcaaaaggtgaagctgaccatcttcaagttgtgcagcatgttcttcagcag
tttatgaaaaagtactcgtactttgtgaaaaagattgaaaacatggatgctttgttcgaa
gcacagttttcacctttggctgactctggacgtttactgagcaagtgtggaaaatgtgct
cggtatatgaagtacatttccactcagccaatgaggctgtactgtgtaacttgtgaagag
gtctactatcttccccagaacggttccattaagctttacaaggaaatcatttgccccctt
gatgggtttgagttgctactgttttcaatggttggccctgatgcaaaatccttcccactg
tgtcctttttgctacaacagtcctccatttgaaggcatcgacaaactcttcggtgcactc
aagcttgatgacactggcaaggttgggaaaggggctggcatgccatgcttcctctgcctg
caccccacatgtaaacaatctatgatcactcaaggagtttgtgcttgtcctgagtgtact
ggtaccctaattcttgatccagtcagcgcacccaaatggcggctttactgcaatagatgt
aactgcattgtcctgctcccacatgccgctcataagatcagtactacagataagaagtgc
ccaacatgtgagtctactatcatcgaagttgattttaacaagaaaactaccccacttaag
gatggagctactttgcatgagggttgcatcttgtgcgatgagctgttgcattcgctcatt
gagatgaagcatgggaagtcattttttatgaggagaggtagaggaagaggcaggggtaga
ggtcgagggagaggaagcagtaggggaagacgggggagctcaagacacgatgatcctaag
atgagcttcagagatttctga

KEGG   Oryza sativa japonica (Japanese rice): 9269718
Entry
9269718           CDS       T01015                                 
Name
(RefSeq) DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    9269718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    9269718
   03400 DNA repair and recombination proteins [BR:osa03400]
    9269718
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     9269718
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Topoisomerases
   9269718
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     9269718
   FA (Fanconi anemia) pathway
     9269718
SSDB
Motif
Pfam: Topoisom_bac Toprim zf-GRF zf-C4_Topoisom
Other DBs
NCBI-GeneID: 9269718
NCBI-ProteinID: XP_015631265
UniProt: C7J0A2
LinkDB
Position
3:complement(join(3499516..3499777,3500136..3500250,3500374..3500538,3501020..3501103,3501262..3501333,3501454..3501532,3501703..3501741,3501852..3501948,3502022..3502074,3502215..3502344,3502422..3502456,3504066..3504170,3504278..3504367,3504717..3504791,3505629..3505757,3505876..3506055,3506695..3506778,3506901..3507017,3507128..3507200,3507274..3507395,3507477..3507599,3507875..3507947,3508176..3508354,3509528..3509833))
AA seq 928 aa
MHHGGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRAC
HMLVTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQW
LVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFAD
AVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWE
IQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQE
KLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHS
IVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKK
LYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLP
TYIIGQQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRCYAT
KDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLENCLQQ
MKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRPCAACNESEMFLKQRPTGE
FMVGCRGFPQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHL
GCIGGCDDILKELMELSRFGSHSQTATPARNQSQTASGVRQGSSRQDLHTSFHPAVQFTN
GQTPVVNPQGFRSTHTQSSGNASGQVQCTSCREPCVLRTANTEANRGRKFYKCQNLACGF
FAWEDDVENSAPRGRGGRGRGGRSSSRQSSASASAGRRGGTQGRGRRGRGRNADGMMFVA
ATGEPVYGSCFICGDPTHFANVCPNLGR
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgcaccacggcggcggcggcggcgcgatccgcgtgctgaatgtggcggagaagccgtcg
gtggcgaagtccgtcgcggagatcctgtcgcggccgtcgggcgggatgcggtcgcgggag
gggcggtcacggtacaaccgcgtcttcgagttcgattactccatcggcggccgcgcctgc
cacatgctcgtcacctccgtcacggggcacctcatggagctcgagttcgacgaccggttc
cgccgctggcactcgtgcgaccccgctgatctcttccacgcccccgttcgcaagtccgta
ccccaggataagcaagacataaaaagaacattggaagaggaagccaggaagtgtcagtgg
cttgtgctttggcttgattgtgatagagagggtgagaatatcgcatatgaagtgattgat
atatgcgcaggtgccaacagccgcctcaacatttggagagctcgtttctcagctttgatt
gacagggaaatccatgaagctgtgcaacatcttgacagacccaacaagctctttgctgat
gctgttgatgcaagacaggaaattgaccttcgcatcggtgcctccttcacaaggttccag
acaatgctgctgaaagatgcatttgttcttgatgacactggtgatgataggaatataatt
ctgagttatggtccttgccagtttccaaccctaggatttattgttgagcgtttctgggag
attcaagctcatgaacctgaagagttctggacaataaattgttcccacacttcagatgaa
ggcactgcatcttttggttggatacgtggtcatttgtttgattactcatctgctgttgtg
atctatgaaatgtgtgttgaagaaccaatggcgacagtgcaaaatgtaaggaatcaagag
aaactaaaataccccccatatccactaagtaccatagagcttcagaaacgtgcctctagg
tacttcagaatgagttccgagcacacaatgaaggtggctgaggaactttatcaagctgga
tttattagttatcccaggacagagactgataacttctctccaaacactgacctacattcc
atcgtacatgaacaagtggctcatccaaattggggaacatatgctcagcgtcttttggat
cctgaagcaagactttggagaaaccccagcaatggtggtcacgatgacaaggcacatcct
cctattcatccaacaaaattttcagctggggaaacaaattggactgataatcacaaaaaa
ttgtatgagcttgttgttcgccatttccttgcttgttgctcccaacctgcagttggagct
gaaacaactgtggaaattgacattgctggtgaacagttcaatgcatcagggcgcgttgtt
cttgctaaaaattatttggacgtatatcggtttgactcatggggcggtacattacttccg
acatacatcattggacaacagtttgttccaacaactttaacgcttgattctggaatgact
cgcccacctcctctgcttgctgaagctgacctccttggttgtatggataaagcaggaatt
ggcactgatgcaacgatgcatgatcacataaaaaagttacttgaccgttgttatgcaacc
aaagatgcaaatacacggttctccccaacaaatctaggcgaggcattggtgatgggttac
gatgaaatggggtatgagctttggaaaccttatttaagatcaatgatggaagctgatatg
aaatcagttagcattggtacaaagagtaaatcagaagtacttgagaattgtttgcagcaa
atgaaggcttgttttcttgatgcaagggcaaacaaggtgaaactctttgatgcaatggga
acattctttgcaaggtcaagtagaccggtcaatgagacacagaactccatagaaactgtg
agaccatgtgctgcatgcaatgaatctgaaatgtttctgaagcaaaggccgactggcgaa
tttatggttgggtgtcggggcttccctcaatgtagaaatgtagtttggctcccacgatct
ctttcaggggctgctgtgactgatcaagtttgtcctacctgtgctccaggtccggtttat
aagattcaatttaagtttcggcgaagggatattccaccaaattttgatgtcgatcacctc
ggttgtattggtggatgtgatgacatactcaaagagctcatggaattaagtagatttgga
agtcatagccagactgcaacaccagcaagaaatcagagccagactgcaagtggtgtaagg
caggggtcttcaaggcaagatttacatactagctttcatccagccgtgcaatttactaac
ggacaaacacctgttgtgaatcctcaaggttttcgttcaacccatacccaaagctcagga
aatgcatcaggtcaagtacagtgcacatcatgtcgagaaccctgcgtattgcgaactgct
aatacagaggctaacagggggaggaagttctataaatgccagaatcttgcatgcggcttt
ttcgcatgggaagacgatgtggagaactctgcgccgaggggccgtggcgggcgtgggcgg
ggcgggcgcagtagcagcaggcaatcatctgcatctgcatctgcagggcggagaggcggc
acccaagggcgaggcaggaggggcagaggacggaatgctgatggcatgatgttcgttgcg
gcgacgggcgagcccgtttacggcagctgcttcatctgcggcgaccctacccacttcgct
aatgtctgccccaacctcgggagatag

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