Oryza sativa japonica (Japanese rice) (RefSeq): 4349535
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Entry
4349535 CDS
T01015
Name
(RefSeq) uncharacterized protein LOC4349535
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4349535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4349535
03019 Messenger RNA biogenesis [BR:
osa03019
]
4349535
04121 Ubiquitin system [BR:
osa04121
]
4349535
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4349535
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
4349535
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4349535
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4349535
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
4349535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
Nup35_RRM_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
4349535
NCBI-ProteinID:
XP_015616958
LinkDB
All DBs
Position
11:110147..116980
Genome browser
AA seq
1097 aa
AA seq
DB search
MMTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR
TRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTVEAKKHLASVRVIQRNLVYI
IGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAI
RCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIIS
AYTRSRVPQMASSVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNS
SSGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSW
NDDTSTVPKMMEGRDSLSKTLKPYKPGIAKETQAVTSLESSLDIDFSTIPSAWNDDDVTS
DGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNCVSS
PSISKSEVKDGDGDYQVTNMASKTSTSVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGV
SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLADSNDSTCQPSSDKHHDWCSDI
QSSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTSPISLWNGKEINHTSTS
DRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNHQPGAVGAVRIDNI
GSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDAPSWKTK
TSNSESRFSFARQDNQGSFLDSSMRNYKSEQNFSLLSQNSHGNIYQSGIAFQSPEEGFAK
SNSLTMLDMLATGTSKPKVSAPPGFSAPARVPPGFSSGFSSHEGLNPPPGFSSHNGPNPP
PGFSSQGGSNQIYGSAYSETRPFDYLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRM
PGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNVPSHQNVGFAEHVQDAFNPMNDNYL
ASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEAN
NFHMLGSNDLYNRAFGL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgagcgacgatggagaccgcacctgcccgctctgtgctgaggacatggat
atcactgaccagcagctcaagccctgcaaatgcggctatgagatttgtgtctggtgctgg
caccacatcattgatatggctgagaaagaggacactgagggccgctgccccgcatgccgc
actcgctatgacaaagataggattgtcaagatggctgccacttgtgacaggacggtagtg
gagaagaatgtggacaagaaacagaagacccaaaaggtcaagtcaaaggccgcggtaact
gtggaagctaagaaacatcttgctagcgtcagggttatccagagaaacctcgtgtacata
attggactacctgcaaatttatgcaacgaaagcatacttgagcgcagggaatactttggt
cagtatggcaaggttctgaaagtttcagtttctcggccgactggggctccttcccagcag
gcaccaacaaacaacagtatcagcgtatatattacatatgccaaagaagaagaggccatc
aggtgtattcaagctgtacacaattttgttttggaagggaaagtgttaagagcgtgcttt
ggtactacaaagtattgccatgcatggctgcggaacatgacctgtggaaatccagattgt
ctctatttacatgatgtaggaagccaggaagatagtttcactaaagatgagataatctca
gcatatacaaggagtagggttccccaaatggcgtctagtgtttctcaaagacgcgcaggg
actgtattacctcctccagcagaagatttctcatatagtgcagtggttgcagctaaacat
ccaatcaagaatggaataactaatactgcaaatcaatccaggctttcgcctccaaacagt
agttctgggagatccacacttccaccagctgcttcatgggggcatcgcgatttgaatacc
aggacaacagcaactggggtggcatcgtcacaatctcttactaaatcaaaaacagatcct
caaagtaattcattctcaagttcttcgactgtttcaagtacaaaactaccttcttcatgg
aatgatgacacaagcacagttccgaaaatgatggaaggacgagatagtttgtctaaaacc
ttgaagccatataagcctggtattgcaaaggaaacccaagctgtaacatcactggagtca
tcgcttgacatagacttctctaccataccttcagcttggaacgatgatgatgtcacatca
gatggcatgtcaaaaggaagtgatgagaagcaggttgtaaatgacaatggaaagtttgaa
tgttcagtttcttcaaagccagctgaatcagggcatcttacatcgaagtcaacgacatca
ccaaagaaagacatcgcagtaaacagtaccaggcaaagtcctctaaattgtgtatcaagt
ccatcgatttctaaatcagaagtaaaggatggtgatggtgattaccaagtaaccaacatg
gcttctaaaacatctacttcggtaattagaaaggaccaatctaatcaagcagctattgac
acagcaaccgaagatactagatctgagagcacggatattgataggctgtctgttggagta
tcttcagtaacattaagcagaaaagatggggttcaaagtattgccgaaaaccaacaaccg
gatgcaatcctaagtacttcagttgtggtgccctttagtcagaatttgaaacttgctgac
agtaatgattctacatgtcagcctagttcagataagcatcatgattggtgttcagatatc
cagagtagtgtgtctcctcagttaaatgacatagaaagttatgcagtagccactgataaa
tctcatggtagagtgctggatgctgctgatcaagcttcgtcttcaccatatgtccatttc
cctaacacgtctcctatttcactgtggaatggtaaagaaattaaccatacatcaacaagt
gatagaacttccacaatgatgcaacctgggctgttatcttcagttgacagcacttctacc
atgttaaatggacatcaagaagggctagggactatatatgcacctggtaaggtttctgaa
catcctagaatgaaaaaccatcagcctggagcagttggtgcagtgagaattgataacata
ggcagttttgacaaggctgtaagtgtaaataaggatgagagcagcataattgctgatatt
ttgtctttggagtttgatccatgggatgagtcatattcaacggctaacaattttgctaag
atgcttagtgcatctgaaaagaacgatgtgctttttgatgcaccttcatggaaaacaaaa
accagcaatagtgagtctagattttcatttgctagacaagataatcaaggaagcttccta
gattcatctatgagaaattataaaagtgagcagaatttcagtttgctatcccagaattct
catggaaacatttatcagagtggcattgcatttcaatctcctgaggaaggtttcgcaaag
agcaactctcttactatgttggatatgctagctaccggcacatcaaagcctaaagtatcc
gcgcctcctggattttcagcaccagcaagagttcctcctgggttttcttctggattttca
tcccatgaggggttgaatccacctccaggattttcatctcataatgggcctaatccccct
cctggattttcttctcagggtgggtctaatcagatctatggttcggcatactcagaaact
cgcccatttgattatcttttgggtataaatactagccattatcaaccacagttagctaga
caaacaagtgatatagaatttgttgatcctgctatattggctgtgggtaaagggcggatg
cctggaataagtgattcagggttggagatgaaaacttcccatacttttccttcgcagttg
caaacatcaaatgatccaaggtttcaattacttatgcagcagaacgtgccttcccatcaa
aatgttggatttgcagaacatgttcaagatgcattcaaccctatgaatgataattatctt
gcatcccgacttatacctcagaaccatggttctctatcctcttacacacagatgtcactc
caacaacctagaagctcacatcttacaaatggtcattgggatggctggggtgatttgaga
caagggaataatgtttccatgcctgacatgtcaaggatgttatatccaactgaagcaaac
aacttccacatgctgggttcaaatgatctgtataacagagcttttggactgtga
DBGET
integrated database retrieval system
