Oryza sativa japonica (Japanese rice) (RefSeq): 9266475
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Entry
9266475 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X2
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9266475
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
osa01001
]
9266475
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
9266475
03036 Chromosome and associated proteins [BR:
osa03036
]
9266475
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
9266475
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
9266475
Protein kinases [BR:
osa01001
]
Serine/threonine kinases: Other
TAF1 family
9266475
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
9266475
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
9266475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
ubiquitin
zf-CCHC_6
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
9266475
NCBI-ProteinID:
XP_015643265
UniProt:
Q67W65
LinkDB
All DBs
Position
6:complement(26359663..26374937)
Genome browser
AA seq
1810 aa
AA seq
DB search
MGDGERREDENPTTSAADDDDDEDYDEPGGGNHFLGFMFGNVDDSGDLDADYLDEDAKEH
LFALADKLGPSLKDIDLIKPSAAPTDPSEQDYDAKAEDAVDYEDIDEEYDGPEVEAATEE
DHLLSKKDYFSSNAVYASVNSKVSVFDEENYDEDEEPPNDNDLPSDNIVQNCTSASAEQL
DMAPSNDNLAVEKMSSSLSEPEESFESEAFQKEMVAEEQLESKTATSLPVLCIEDGSVIL
KFSEIFGAQEPVRKAKMDRHKRPVNKELQITNFTDIVEEDEEVFLRSTIQNLSALKHIKT
NDNFVESDSDESTSDVALRLKDSCLSEQPMKDKDIPTAVQSPVFPDFYPLEHENWENDIV
WGNSPTTAIQPCLTSCAISKESLDDHNEDQAEGYVSGCWDVQNKFHSSSVMADPFGHTEI
PDSTSYRSPENSYSPLRKETAQENNSLDEPNNITQPVKIDTTRHLNKLSLLNKELLEGSW
LDNIVWDPSEDVPKPKLIFDLKDDHMLFEILDEKNGDHLRSHARAMIVTRPMKTSAVENV
DHNNQAIALSGRFNISNDKFYSNRKMSQQARSHAKKRATMGLKLVHSVPAQKLQTMKPKL
SIKEIANFHRPKAKWYPHENKLTARFQGDECSHGPMTAIVMTLGGKGVKFLVNAEETPLS
VKSKASKKLEFKPSEKIKLFCSGKELQDDISLAMQNVRPNSILHVVRTEIHLWPKAQRLP
GENKPLRPPGAFRKKSDLSVKDGHVFLMEYCEERPLLLANAGMAARLCTYYQKTSPSDQT
ATSLRSNSDGLGTMLAIDPADKSPFLGNIRSGSHQSCLETNMYRAPVFPHKVATTDYLLV
RSPKGMLSLRRIDKLYAVGQQEPHMEVFSPGTKNMQNYILNRILVYVYREFRAREKPGII
PQIRADELPIQPPITEAIVRKRLKHCADLRKGPKGHLFYIQRPDFRIPSEEELRRLLTPE
NVCCYESMQAGQYRLKHLGIEKLTQPVGLASAMNQLPDEAIELAAAAHIERELQITSWNL
TSNFVACTNQDKENIERLEITGVGDPSGRGLGFSYVRVTPKAPVSNSTHKKKSAAAKGTT
VTGTDADLRRLSMDAARELLLKFGVPEEQIDKLTRWHRIAMVRKLSSEQAASGVTMDEIP
VSKFARGQRMSFLQLQQQTKEKCQEIWDRQIQSLSAMDGNENGSDTEANSDLDSFAGDLE
NLLDAEEFDDEDVGNTDIRSDKMDGMRGLKMRRCHTQSQINEEIQDDVAEAALVEKLLEE
SDSDMKRKKQPVETTNYSTPMYNQGNKMKQGKAGQMIKSSVYAGALTPKESIPREAKEVE
NFAEGSLPSKLRTKTGFDANDDIILVKRKNIPGKDGFKEKRQGARGDTLVCGACGQLGHM
RTNKLCPKYGEDPETSEMDVNSIRSHPPDIVSNAQIKTSNKRLVAKVSSEAFETEGPESI
EKAKPVPVKFKCGAPEKSLDRNMSISASLVSDKRMMDATDSKSTGKVNKIKISNKIKYDD
YPPDTPKPSVVIRPPAEVEKDLPRKKIIIKQPKVLGDQQRPTELRSGQEPRKTRKIVELS
SFEKRDREDDNGFSGQPIQINSSHDRGWGLVGKRSKGIMESSESWRAFEEQRERQEQRLI
EARIYDARREDELQKAKKKNKKKKKHEFRDDDLLDPRPYKNDRRVPERGRAAKRRTPADM
TEYTPPAKRHRGGEVELSNILEKIVDHLRTMSCSFLFRKPVTKKEAPDYFDIIERPMDLG
TIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLADELLELCDYLLEESADV
LDDAEYAIED
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacggcgagcgccgcgaggacgagaacccgaccaccagtgccgcagatgacgat
gatgatgaggattatgatgaacctggtggagggaatcacttcttgggcttcatgttcggc
aatgttgatgattctggtgacttggatgctgactatctcgacgaggatgcaaaggagcac
ctttttgcactggcggacaagcttggcccatctttgaaagacattgatctgatcaagcct
tctgcagcaccaactgatccttctgagcaagactatgatgcaaaagcagaagatgctgtt
gattatgaagatattgatgaagaatatgatggacctgaagttgaagcagctacagaggag
gaccatttgctatccaaaaaagattacttctcttcaaatgcagtttatgcttcggtcaat
agtaaagtttcagtgtttgatgaggagaactacgatgaggatgaagaaccaccaaatgat
aatgatttgcctagtgataatattgtgcaaaactgcacttcagcttcagctgagcaactg
gatatggcaccgtcaaatgacaaccttgctgttgaaaagatgtctagttcgttatcagaa
ccagaagaaagttttgaaagtgaagcttttcagaaagaaatggttgctgaagagcaactt
gagtctaaaactgcaacttccctcccagttttatgcatagaggatgggagtgttatattg
aagttctctgaaatttttggagcccaggagcctgtaagaaaagccaaaatggaccgccat
aagcgcccagtgaataaagagctccagattacaaatttcacagatattgttgaagaagac
gaggaggtatttctacgcagcactattcaaaatttgtcagctttgaagcatatcaagacg
aacgataattttgttgagagtgacagtgatgagtcaacttcagatgttgccttaagactg
aaagactcgtgcctttccgaacaaccgatgaaagataaagatattcctactgctgtacaa
tctccagttttccctgatttttatccactcgagcatgaaaattgggaaaatgatattgtt
tggggcaattcaccaacaaccgcaattcagccttgcttaacaagctgtgcaatatccaaa
gaaagcttggatgaccacaatgaagaccaggccgagggttatgtctctgggtgttgggat
gtacagaataaatttcatagttcttcagtaatggcagatccttttgggcatacagaaata
cctgattcaactagttaccgttcccctgagaacagctattctccattaagaaaggagact
gctcaggagaataacagcttagatgaaccaaataacataactcaaccggttaaaatcgac
accacacggcatttaaacaagctctctttactgaacaaggagttgttagaaggatcttgg
ttggataacatagtttgggatcccagtgaggatgtaccaaagcccaagctaatctttgac
cttaaagatgatcacatgctttttgaaatattagatgaaaagaatggggatcacctccgc
tctcatgctcgtgccatgattgttactcggccaatgaaaacttcagcagtggaaaatgtt
gaccataacaatcaagcaattgcattgagtgggagattcaacatttccaacgacaaattt
tattctaacaggaaaatgtcgcagcaagctagatctcatgctaaaaagcgtgctacaatg
ggcttaaagttggtacattctgttcctgctcagaagctccagaccatgaagccaaagttg
agcatcaaagaaatcgcaaacttccatagaccaaaagctaagtggtatccacatgaaaat
aaacttactgctagatttcaaggagatgagtgcagtcatgggccaatgactgctattgtg
atgactttgggaggaaaaggagtcaaatttctggtcaatgcagaggaaactccactttct
gtaaaatcaaaagcttccaaaaagcttgaatttaaaccttctgagaagatcaaattgttc
tgttctggaaaagagcttcaggatgacatctccttggctatgcaaaatgtgcgaccaaac
tctattctgcatgttgttcgcactgaaatacatttatggccaaaagcacagagattgcct
ggtgagaataagcctctacgtcctcctggtgcattcaggaaaaaatctgacttgtctgtt
aaggatggacatgtatttttgatggaatactgtgaggagaggcctttgcttcttgcaaat
gcaggaatggctgcacgactgtgcacgtattaccagaagacttcaccttctgaccaaaca
gctacatccctgcgaagcaacagtgatggactgggtacaatgcttgctattgatcccgct
gacaaatctccttttctggggaacattcgttctggctcccaccaatcatgtcttgagaca
aatatgtacagagcacctgtatttcctcataaggttgcgacgacagattatcttttagtt
cgttcacccaaagggatgctttctcttcgtcgcattgacaagttgtatgctgttggccaa
caggaacctcatatggaagtattttcacctgggacaaaaaatatgcagaattatattctg
aatcggattcttgtgtatgtatatcgtgagttccgtgctagggagaagcctggtattatt
cctcagattcgagctgatgaattacctattcagcctcctataacagaggctattgtgagg
aaacggttaaagcattgcgcggatttaaggaaaggaccaaagggacatttgttctatatt
cagagacctgattttcggattccatcggaggaagaactgagaagattattgacacctgaa
aatgtctgctgttatgagagtatgcaagctggccagtatcgtctcaagcacttaggaatt
gagaagcttactcagcctgtgggacttgcatctgccatgaatcagcttcctgatgaagct
attgagcttgctgctgcagctcatattgagagggaattgcaaatcactagctggaatctt
accagcaattttgttgcttgtacaaaccaggacaaggaaaatatagagagattagaaatt
actggtgttggtgatccatctggccgtgggctaggatttagctatgtacgagtaactcca
aaagcacctgtatccaattcaacacataagaagaagtcagctgctgcaaaaggcaccact
gtgactggaacagatgctgatctccgcaggttgagcatggatgcagctcgagagttgcta
ctcaaatttggcgttccagaagagcaaattgacaagttaacaaggtggcatcggatcgcg
atggtgaggaagctttcaagtgaacaagctgcatcgggtgttacaatggatgaaattcca
gttagtaagtttgcacggggacaaaggatgtcttttctgcagcttcagcagcaaactaaa
gagaaatgtcaggaaatttgggacagacaaattcagtcactttcagctatggacggcaat
gaaaatggcagtgacacagaagctaacagtgatcttgactcatttgctggggatcttgaa
aatttgctagacgcagaagaatttgatgatgaagatgttggtaatacagacataagaagc
gataaaatggatggaatgagagggcttaaaatgagaaggtgtcatactcaatcccaaatt
aatgaggaaattcaagatgatgtagcagaggctgctctagtagaaaaactgcttgaagag
agtgatagtgatatgaagaggaagaagcagcctgtggaaactacaaattatagcactcct
atgtataatcagggcaataaaatgaagcagggtaaggctggccaaatgattaaatcgtct
gtatatgccggtgcattaaccccaaaagagagcataccaagagaagccaaggaggttgaa
aattttgctgaaggaagtttaccctcaaaactaagaacaaagacaggatttgatgcaaat
gatgatattattctagtaaaaaggaaaaatatcccaggaaaggatgggttcaaggaaaag
agacagggtgcaaggggagacactcttgtatgtggagcttgtggtcagctcgggcacatg
cggaccaacaaactgtgccccaagtacggggaggaccctgaaacatccgaaatggatgtc
aattccatcaggtctcatcctcctgatattgtgagtaatgctcaaataaaaacatcaaac
aagaggttggtagcaaaagtttcgtctgaagcttttgaaactgaaggacctgaaagtatt
gaaaaggctaaacctgtccctgtaaaattcaaatgtggagcacctgagaagtcattggat
aggaacatgtcaatctcagcttctttggtttctgataaacgtatgatggatgctacagat
tcgaaatcaactggaaaggttaataagattaaaatatctaacaagataaaatatgatgat
tatcctcctgatactcctaagccatctgttgtaataaggcctcctgctgaagtggagaag
gatctacctcgtaagaaaattattatcaagcagcccaaggtgcttggagatcagcaaaga
cctactgaacttaggagtggtcaggagcccagaaagacaaggaaaattgttgaattgtca
agctttgagaagagagacagagaggatgataatggtttttctggacaacctattcagatc
aattcctcacatgatagggggtggggtctggtgggaaaaagaagcaaaggaataatggaa
agtagtgaatcctggagagcttttgaggagcaacgagagagacaagaacagagactaatt
gaagctaggatatatgatgcaaggagagaggatgagctccagaaggcaaagaagaaaaac
aagaaaaagaaaaaacatgaatttcgagatgatgacctacttgatcctaggccatacaaa
aatgacagaagggtacctgaaagaggtcgagcggcaaagagacgtaccccagctgatatg
acagaatacacaccaccagctaagcggcacagaggaggagaggttgagctctccaacata
ttggaaaaaatagttgaccacttgcggacaatgagctgttcattccttttccgtaaaccg
gtgacgaagaaagaggctcctgattactttgacataattgagcgtccaatggatcttggt
actataagggacaaggtgcgaaagatggagtataaaaatagggaggattttaggcatgat
gtggctcagatagcactgaatgcacatacatacaatcttaaccgccatccccacatccct
ccgcttgctgatgagctcttggagttgtgtgattatcttcttgaggaaagcgcggatgtg
ctagatgatgcggaatacgcgatcgaggactag
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integrated database retrieval system
