Oryza sativa japonica (Japanese rice): 9268477
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Entry
9268477 CDS
T01015
Name
(RefSeq) transcription factor SPEECHLESS isoform X2
KO
K20558
transcription factor SPEECHLESS
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
9268477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
9268477
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
9268477
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Motif
Other DBs
NCBI-GeneID:
9268477
NCBI-ProteinID:
XP_025882342
LinkDB
All DBs
Position
6:join(20346026..20346529,20347379..20347999,20349508..20349573)
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AA seq
396 aa
AA seq
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MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEGCANVVAGGAPATTTTLGSPI
AAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVADRDGDGDDDDGSPQKRRKCC
SPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVD
YIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCCSPRPPQLSPRLPPQLLKSTPP
LSPRLAVPISPRTPPTPGSPYRLLRLPPPPPPASGSNYASPAMTPTHHETAAPSLDAIAA
ELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAK
ISTVDDTAVNSFTVKIGIECELSAEELVQVIQQTFT
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgcgctgtgtgatcagctcctcttggtggacagcgacggcggcgagttcatc
ccccaccacgccgacgccgacgccgacgacctcttcaccatcctcgagacgtgggagggc
tgcgccaacgtcgtcgccggcggcgcccccgcgaccacgacgacgttaggtagtcctatt
gccgccgctgcctgcatctccggcgttgttggtgggcagaatcatcagcagctgccggaa
cctgccgccgcgaagaccgtgccagccaccaataacaagcggcgggaggaggaggtggcg
gaccgtgacggcgacggagacgacgacgacggttcgccgcagaagaggcgcaagtgctgc
tcgccggagtcttcgacgacggacgtggcggcggcgacgacgcccaagacggcgcacatc
gccgtggagcgcaaccggaggaagcagatgaacgagaacctcgccgtgcttcgctccctc
atgccatgcttctacgtcaagcggggagaccaggcatccatcataggaggagtggtggac
tacatcaaggagctgcagcaagtattgcactcgctggaggccaagaagcagcgcaaggtc
tacaccgaccaggtgctcagcccacggccgccggcgacggtggcggcgtcgtgctgcagc
ccgcgcccaccgcagctcagccccaggctgccgccgcagctgctcaagtccacgccgccg
ctcagcccgcggctcgccgtgccgatcagccccaggacgccgccgacgcccggtagtccc
tacaggctcctccggctgccgccgccgccgcccccggcgtccggctccaactacgcgtcc
ccggcgatgacgccgacccaccacgagacggcggcgccgtcgctggacgccatcgccgcc
gagctgtcggcgtacgccagcaggcaggcgctgggcggcggcctcctcctccccgacgtg
aaggtggagttcgccggcgcgaacctggtgctgaagacggtgtcgcagcggtcgccgggg
caggcggtgaagatcatcgccgccctggagggccgatcgctggagattcttcacgccaag
atcagcaccgtcgatgacaccgccgtcaactccttcactgtcaagattggaattgagtgc
gagctcagcgctgaagagttggtacaggtgattcagcaaacgttcacatga
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