KEGG   Oryza sativa japonica (Japanese rice): 9272729
Entry
9272729           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9272729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    9272729
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9272729
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     9272729
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector Glyco_hydro_84_hel CSM2
Other DBs
NCBI-GeneID: 9272729
NCBI-ProteinID: XP_015614203
LinkDB
Position
10:complement(join(22577280..22577417,22577500..22577601,22577693..22577935,22578336..22578464,22578650..22578754,22578847..22579038,22579137..22579290,22579799..22579860,22579942..22580088,22580168..22580215,22580742..22580879,22580956..22581102,22582230..22582316,22582405..22582512,22582592..22582692,22583521..22583647,22584471..22584587,22584680..22584757,22584891..22584935,22585288..22585407,22585489..22585615,22585684..22585904,22585998..22586180,22586423..22586575,22586702..22586797,22586877..22586982,22587061..22587143,22587227..22587379,22587470..22587709,22587804..22587932,22588018..22588065,22588433..22588579,22588658..22588766,22588851..22588996,22589366..22589460,22589595..22589700,22589828..22590019,22590107..22590337,22590423..22590517,22591077..22591180,22591691..22591935,22592027..22592152,22592281..22592418,22593109..22593300,22593389..22593565,22593652..22593780,22593854..22593967,22594058..22594397,22594487..22594715,22594806..22595106,22595962..22596060))
AA seq 2413 aa
MIPFNSAVAEDVRSLVQGVDDSTFDSTHRELCQLADCSPDGCSLLLQVCLDEVLLNADVA
KSSRLKPELLSTVFKYCLDKPYFSTSFCEALKTVHVSDMFLVKLSNELNLSAGERVGVGL
ALSDSGNLGLITKGQKFSIAEIEEICANPAHVLTNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLLNVKEMPFYVPAPIKEGNARPTISSRHMELYTGSLDDDFDSLLSEIGKEISMADII
TELGYGCTSDIAHCKEILSLFEPLDDMGISKLLGAVVCTHVGLGEAHNTYSTFMSAVGNS
QPSDSSQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRAC
KDPFPLHAVCGSLWKNTEGQLSFLKHAVAAPTDTFTFKHCSRKMVFPEFANRMQGNQAWY
CLDLLEVLCQLAELGYATMVRSMLDYPLIHCPDVLLLGVSHINTPYNLLQYEVLSCVFPM
ILKDTTYSSLMNSLWHVNPYLTLRGFVDSHSDANCLLRTVEICQDLTILSAVLDSTPFAF
SIKLATVAFRQSHSNLEKWLVEKLTAQGETFLEECVKFLKEIMSNTTYEAAEGAVQQPQV
MILDICRESCPLIIKVLQSHSGQLLSNQLVEELRRVEAVHESRNHGVVGRDAPTSEGGPD
DIEAQANIYFHQMFSGQISVDAMVQMLARFKESTNKRELSIFNCMVSNLFEEYKFFPKYP
DTQLKLAAVLMGSLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLI
EWPQYCNHILQISHLRATHAELVAAIERVLAKISSSQNEPNVGSMLSADQHGSSSIGNME
ASEASWQLINPTPTQLERSHQQRHQGFLGERSKGSTNIIQAKNILSSGQMPLASSPGDLA
VNLKAATTPSSQASPHHSTTVSAPLQPTGFLRSRSSAPSGIRQPSFTTGFGAALNIETLV
AAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVMKR
ASIEPNFHDLYLKFFDKVNSKSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSW
LGKFTIGRNQTLRAKEIDPKILIIEAYERGLMIAIIPFTSKILEPCQSSIAYRPPNPWTM
GILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKD
VSASQAPVVAEVSSGVMPTINHVEPQPEINSTSRATSLPNMLSQYAAPLRLPTNNMVEDD
KSALIMPEQVSSLGLSQVSPSQTPSLSSSSFSLSQLIAAIPRADIYFRINEKLSSFGSLQ
YSKIMDMALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTL
AGSLAHVTSKEPLRVALSSHLRSLIQGITNNTESTEQIMLILVNDNLDLGCALIETVATR
KAVEMIDGEIKQPFSQLRRQKELLGSAYYDAFPYTQGLKRVPDALRPKPTGHLSAAQRRV
YEDFITVWHSQSSQNAGGSATATAMAVAPSNSSVPRVYSPNSALTDSSSFSSHFASASQT
TELVHEESDRNAHLSSLSSKIGASDTSTQVIGTTNVASVFPPMVPNDLPVGEPTTTNKDL
VTSAPLSPTTAVDRMGSVFVEPLNTSDALEMYQQVSQKLDTLIAKDGKDAEIQSVIAEVP
DILLRCVSRDEAALAIAQKVFRSLYDNASNSNYVTWLLAALVAIRDVCKLVVKELTSWVI
YSDEDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESI
SIAEVYNVVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNK
EENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLKGDDLT
DRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKYSSVDI
GPSKGSLFNKILSVIVRIIQRDAEEKKVSFNPRPYFRLFINLLSELTTSDLHHDSANFQV
LTAFANAFHVLQPLRVPAWSFAWLELVSHRSFMPKLLLCNAQKGWPFFQRLLVDLFKFME
PYLRNAELGQPIHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAF
PRNMRLPDPSTPNLKIDLLAEISIPPRIMSDVDGALKSKQMKTQVDEYLKRPDGSFLTDL
KQKLLLPQNEANIAGTRYNVPLVNSLVLYVGMQAVQQLQLNKMNASASAQQMNQSQLDVQ
IETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFSEANQEIVQEQ
ITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEKLFESVARSCGGK
GGDDGVGLPDGGH
NT seq 7242 nt   +upstreamnt  +downstreamnt
atgatccccttcaattccgccgtagccgaggatgtccgctccctggtgcagggcgtggac
gactccaccttcgactccacccaccgcgagctctgccagctagcggactgcagtcctgat
ggatgcagtttgctgcttcaagtttgtttggatgaagtgctgctgaatgccgacgtggca
aagagctctcgattgaaacctgagctcttatcaactgttttcaagtattgtctggataaa
ccatacttcagcaccagtttttgtgaagcactgaagacagtacatgtcagtgatatgttc
cttgtaaaattgtcaaatgaacttaatctatctgctggagagagggttggagttgggctt
gccctatcagattctggaaatctaggcttgattacgaaagggcaaaagttctcaatcgct
gaaatcgaggagatatgtgcaaatccagcccatgttttaacaaatgatcaaattcacgat
attgttgtgtttcttcaccagactgatggcctctcaaagcatatggattctttcactaac
atcatctccctattaaatgtcaaagagatgccattctatgttcctgccccaattaaggaa
ggcaacgctcggccaacaatttcttcaaggcacatggaactatacactggtagcttggat
gatgattttgattcccttctatctgaaattgggaaagaaataagcatggctgacatcatt
actgaattaggctacgggtgtacttcagatattgctcattgtaaagaaatactgtcacta
tttgagcctcttgatgatatgggaatctctaagttgcttggagcagttgtttgcactcat
gttggtcttggtgaagctcataatacatattcaacgttcatgtcggccgttggcaacagc
caaccaagtgactcatctcaatttactgcatggaatattgatgttctcgtggattcaatt
aatgaaattgccccaagaactaattggattactgtagtggaaaatcttgatcatgagggt
ttctgtatccctgatgaagcggcattttgtttgctgatgtctatatattctcgggcctgc
aaggatccatttcctcttcatgctgtctgtgggtcactgtggaagaatacagaaggacaa
ttatcattcttgaaacatgcggtggctgcgccaactgatacatttacattcaaacattgt
tccaggaagatggtatttccagaatttgctaaccgcatgcaaggcaatcaggcttggtac
tgcctggaccttctagaggttttatgccaacttgctgaacttggctatgcaacaatggtt
cggtcaatgcttgactacccactgattcattgccctgatgttttacttcttggtgttagc
cacatcaatactccatataatctcctccagtatgaagtattgtcttgtgttttccctatg
atactgaaggacactacatacagtagtcttatgaactctctctggcatgtcaacccttac
ctcactcttcgtggatttgttgattcacattccgacgcaaattgccttctcagaactgtt
gagatatgtcaagacctaacgatcctatccgcagtccttgattccaccccgtttgcattt
agcatcaagcttgctacagttgcttttaggcaaagtcatagcaatcttgagaaatggttg
gttgaaaagctgactgctcaaggagagacttttcttgaggaatgtgtgaaattcttgaag
gaaattatgagcaacacaacttatgaggctgcagaaggtgctgtccaacaacctcaagtg
atgattttggatatttgccgagaatcttgccctctaattataaaggttctgcaatctcac
tcgggccagctgttatctaaccaacttgtggaggaactaaggagagtggaagcagtgcat
gaatcaaggaatcatggtgttgtaggaagggatgcccctacttctgagggaggtcctgac
gacattgaagcacaggcaaatatatattttcaccagatgttttctggacagataagcgtt
gatgctatggtacaaatgcttgcacgtttcaaagaatctacaaacaagagggagctatca
attttcaattgcatggtttcaaatttgttcgaggagtacaaattcttcccaaagtatcca
gatacacaacttaagttagcagctgtgctcatgggatctctcattaagcatcaacttgtg
gctcacctgggacttggaattgctctacgtagtgttcttgatgccttgcgtaaatctatc
gattcaaagatgtttatgttcggaacaacagcgctagagcagtttatggatcgtctaatc
gagtggccacagtactgtaaccatatattgcagatatcacatcttcgtgcaacacatgcc
gaattagttgctgcaattgaacgagtgctcgccaagatatcgtcaagtcaaaatgagcca
aatgtaggcagcatgctttctgcagatcagcatggttcatcatctattggaaatatggag
gcttctgaagcatcgtggcagctcatcaatccaactccaacacaacttgaacggtcacac
caacagaggcaccagggtttccttggggagaggtccaagggctctacaaacatcattcaa
gccaaaaacattctttctagtgggcaaatgccacttgcttcatcacctggtgatttggct
gtcaatctaaaggctgccacaacaccatcgtcacaagcttctcctcatcattctaccact
gtatcagctcctttacaacccactggctttctgcggtctagaagttctgctccttcaggc
attcgacaaccttccttcaccacaggatttggagctgctctgaatattgaaactctagtt
gccgctgcagaaagaagagatacaccgattgaggcccctccttctgaagttcaagacaag
attttcttcatgatcaataatatttccacttccaatatggaggctaaggcaagagaattt
aacgaggttttgcaagaacagtattatccctggtttgcgcaatatatggtcatgaaaagg
gcaagcattgaaccaaattttcatgatttatacttgaagtttttcgacaaagtcaactca
aaatcattgaataaggaaatggttaaagctacatatgagaactgcaaggtcttattacag
tccgatctcataaaatctagttcggaagaacgttcattgcttaaaaatcttggtagttgg
ctaggaaaattcactataggaaggaatcaaacattacgagcaaaggaaattgatcccaaa
attcttattatagaggcatatgaaaggggtttgatgattgctattataccattcacatca
aagattcttgaaccttgccagtcgagtatagcataccgtcctccaaatccttggacaatg
ggtattcttagccttctcgttgagatctataatctacctaatctcaagatgaacctgaag
tttgacattgaggtcttgtttaagaatctaagtgttgatatgaaagatgtgaaaccatct
tctcttctgaaagaccgtattcggcaaatagagggaaatccagatttttcaaataaagat
gttagtgcatctcaagcaccagtagttgctgaggtttcctctggcgtcatgcctacaata
aaccatgtggaaccacaaccagagataaatagcacttcccgtgctacaagccttccaaat
atgttgagtcagtatgcagcacctcttcgccttcctacaaacaatatggtagaagatgac
aagtccgctttaatcatgcctgaacaggtttcctctcttggtttgagccaggtttcgcca
tcacaaacaccatcactatcatcgtcttcattttctcttagccagcttattgcggcaatt
ccacgtgcagatatatatttcagaattaatgaaaagcttagctcttttggctcgttgcag
tatagcaaaatcatggatatggctttggataaggccatcaaagagattataggtcctgtc
attcaaagaagtgttacaatagcgagccgaacaactaaggaacttattctaaaggattat
gcaatggaagcggatgatagtgccgtatctcgttctgcacatttgatggtcggtacacta
gctggaagtcttgcccatgttacatccaaggaacctcttcgtgttgctttatcatctcat
cttcgtagtcttattcagggcataactaataatactgaatccacagagcagattatgctt
attcttgtcaatgataatctggatcttggatgtgccctaatagagaccgttgcaacacgc
aaggctgttgagatgatcgatggggaaatcaagcagcccttttcacaactaaggagacaa
aaagaactacttggatctgcatattatgatgcttttccttacactcaaggtcttaagcgt
gttccggatgctcttcgtcctaagcctactggccatttatctgctgcccaacgacgagtg
tatgaggacttcattactgtatggcacagtcagagtagtcaaaatgcgggtggttcagct
actgctacagcgatggcggtcgctccaagcaattccagtgtacctcgagtttacagtcca
aattcagcactgacagactccagtagcttttcctcccattttgcatctgcaagtcagact
acagaactggtacatgaagaatcagatcgcaatgcacacctttcaagcctttcttcaaaa
attggcgcgagtgacacatctacccaagttattggaaccacaaatgttgcatctgttttt
ccgcctatggttcccaatgaccttccagtgggtgaaccaacaaccacgaataaagatctt
gttacttcggcaccactttcacctacaactgctgttgatcggatgggatctgtttttgtg
gaacctttgaatactagtgatgcgctggagatgtaccaacaagtttcacaaaagctggat
actttgatcgcaaaggatggcaaagatgcagaaattcagtctgtcattgcggaggttccc
gacatcttactcagatgtgtcagtcgagatgaagctgccttggctattgcacagaaggtt
ttcagaagtttgtatgacaatgcatcaaacagtaattatgtcacatggctcctagcagct
ttggtcgcaatacgtgatgtttgcaaacttgtcgtcaaggagttaacgagctgggtaata
tattctgacgaagataagaagtttaacatcgacataattattggactaattcggtctgaa
ctgattaatcttggggattacaatgttcatttggcgaagattattgatggcggaagaaac
aaggctgcaaccgagtttgctatatcacttgtccagacattgattacccaagaatctatt
agcatcgcagaggtttataatgttgttgatgccttatcaaaacttgcaatcaggcccagt
tctcctgaatcgctgcagcagttgattgaaatcgctagaagttttgcttccgtgaaggat
gaaaatattagacagtcaagggataaaaaggttttatccggtcgtcctttggtgaataaa
gaggaaaataatgctaatgatgttgcgttcactgatgctgttggttttcaggagaaggtc
gcagtatcattctctgaatggtgtaatatatgcgatcatcccactatgggtgattcagca
tacactcattacattgtgaagctgcaacaggatggcttgctaaagggagatgatttgacc
gaccgcttttaccatattctcacggaacttgctgtggcacactctgtagtctctgagcaa
gtagttgctcctggcgggatttctcagcagccaacgcagcaactccagatttcatacttc
tcaattgattcatattcaaagcttgtggcactggtggtaaagtactcttctgtggatatt
ggaccgagtaaaggaagcctttttaataagattctttctgttatagttaggattattcaa
agagatgctgaagaaaagaaagtttctttcaatcctcggccgtattttcggttgttcata
aatttgcttagtgagcttactacttctgaccttcaccatgatagtgctaattttcaggtg
ttgacagcatttgccaatgcattccatgtgcttcaacccttgagagttcctgcatggagt
tttgcttggcttgaattggtaagccacagaagcttcatgccaaagctattgctgtgcaat
gcacagaagggctggccattcttccagaggttgcttgtcgatttgttcaaattcatggaa
ccatatttaagaaatgctgaactgggacaacccatacacctgttgtacaaaggaactttg
agagtgttacttgtgctactgcatgacttccctgagttcctttgcgattaccacttcagt
ttctgtgatgtcattccccccagctgcattcaaatgcgcaatgttattcttagtgctttt
ccacgcaatatgagacttccagatccctctactccaaatttaaagattgatcttcttgct
gagatttcaattcctccaagaatcatgtctgatgttgatggtgccttaaagtcaaagcaa
atgaagacacaggttgatgagtacctcaagaggccagatggatcctttttaactgattta
aagcagaagttacttctgccgcaaaacgaagcaaatattgctgggactcgttacaatgta
cctcttgttaattcacttgtgctctatgtgggcatgcaggctgtgcaacagttgcagctt
aataaaatgaatgcatcagcgtcggcgcagcaaatgaaccaaagtcaactggatgtccag
attgagacagctacagagctcttcagaaatcttgtaatgaattcggatacagaaggtcgc
tacctcctcctcaatgcgattgccaaccagctgcgctatccaaacaaccacacacactat
ttttccttcataattctttacttgttttctgaggcaaaccaggaaatagtccaggagcaa
ataactagggtacttctggaacggctaatagttaaccgccctcacccgtgggggctacta
attactttcattgagcttataaagaatccacgctacagtttttgggctcgatcatttact
cgctgtgcacctgagatcgagaagctgttcgagtctgttgcaaggtcttgtggaggaaaa
gggggagacgatggagttggtctccccgatggtggccattaa

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