Octopus sinensis (East Asian common octopus): 115220693
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Entry
115220693 CDS
T07665
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
osn
Octopus sinensis (East Asian common octopus)
Pathway
osn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115220693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osn03019
]
115220693
Messenger RNA biogenesis [BR:
osn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115220693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
TDP-43_C
RRM_7
RRM_PARP14_3
RL
Motif
Other DBs
NCBI-GeneID:
115220693
NCBI-ProteinID:
XP_029646684
UniProt:
A0A6P7T7B5
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Position
LG17:complement(3606933..3613291)
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AA seq
395 aa
AA seq
DB search
MSQYIQVAEDENSELIEIPIELDGTLLLSTLSAQFPGACGLKYRNPNTCAVRGIRLSLGQ
LYPPEDGWEDRVYFSVFPKDNKRKSDDGMDSGAIKAKRVNKKCSDLIVLGLPWKSTEEDL
RQYFSQFGELLMVQVKKDLKTGQSKGFGFVRFQDYESQLKCINQRHMIDGRWCDVRIPNS
RDGSQQQVNSKVFVGRCTEDMTEDDLLTYFSKYGEVIDVFIPKPFRAFAFVTFTDPDIAQ
ALCGEDHIVKNVSVHVSSALPKPADKHNSGNSGNWDRRGPQGNYNQGYGQGGWNQGNRNS
NGNMNGPPMNFGNFQINPAMLAAAQAMLSGPGGWGPLGMGQGGGGESNSQNSNQSFGSIG
SGPNNNYLGWGGPAENGQGHSANWGGSLSKSGGWN
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatacatccaagttgccgaggacgagaattcggagctgatcgagatccccatc
gagctggatggtactctcttgctgagcaccctctctgcccagttccccggcgcttgtggt
ctcaagtaccgcaaccccaacacatgtgcagtgcgcgggattcgactcagcctcggacag
ttgtatcctcccgaagacggatgggaagatcgtgtttacttcagtgtctttccaaaagat
aacaagaggaagagtgatgatggcatggacagcggagccatcaaagccaagagagtcaac
aaaaagtgtagcgaccttattgtgttgggcctaccttggaaaagtactgaagaagatctg
agacaatatttttcacagtttggtgaactgttaatggtgcaggttaaaaaagacttgaaa
actgggcagtcaaagggctttggttttgttcgattccaagattatgaatcgcaattaaaa
tgtatcaaccaaagacacatgattgacgggcgttggtgtgatgtgaggattccaaactcc
agggatggtagtcaacagcaagtaaacagtaaagtgtttgttggccggtgtacagaagac
atgaccgaagatgaccttctcacttacttctctaaatatggtgaagtcattgatgtcttt
atccccaaaccattccgggcgttcgcatttgttacattcactgatcctgatattgctcaa
gctttgtgtggcgaagaccacattgtgaagaatgtcagcgttcatgtgagcagtgcactg
ccgaaacctgcagataaacacaatagcggcaactctggcaactgggataggcgtggtcct
caaggcaactataatcaaggttatggacagggtgggtggaatcagggaaaccgcaatagt
aatggcaatatgaatggacccccgatgaattttggcaactttcagataaatccagcaatg
ttggcagctgctcaggccatgcttagtgggcctggggggtgggggccattaggaatggga
caaggtggagggggagagtctaacagtcaaaatagcaaccaaagctttggtagtattggt
agtggtcccaataacaattatttgggttggggtggcccagcagaaaatggtcaagggcat
tcagcaaattgggggggttcactatcaaaatctggtggatggaattaa
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