Oceaniradius stylonematis: ABWH87_07080
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Entry
ABWH87_07080 CDS
T10754
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ost Oceaniradius stylonematis
Pathway
ost03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ost00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABWH87_07080 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ost03021
]
ABWH87_07080 (rpoB)
03400 DNA repair and recombination proteins [BR:
ost03400
]
ABWH87_07080 (rpoB)
Enzymes [BR:
ost01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABWH87_07080 (rpoB)
Transcription machinery [BR:
ost03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABWH87_07080 (rpoB)
DNA repair and recombination proteins [BR:
ost03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABWH87_07080 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
XHC17031
LinkDB
All DBs
Position
1431363..1435505
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTMTFNGRRRVRKFFGDIPDVAEMPNLIEVQKASYDQFLMMDEPEGGRPDEGLQAAFK
SVFPIKDFAGTAQLDFVRYDYEAPKFDVEECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK
SVKDIKEQDVYMGEMPLMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF
AARVIPYRGSWLDIEFDAKDVVHARIDRRRKIPVTSLLMALGMDAEEILSTYYDFVTYER
DGEAWRIPFNADSLKGTKPAVDLIDADSGEVVVEAGKKVTARTVKQLAEKGIKALKATDE
ELYGSYLAEDIVNPETGEIYLEAGDEIDEKTLAVLIESGQTSFPVLDIDHVNVGPYIRST
LAVDKNETRQDALFDIYRVMRPGEPPTMETAEAMFQSLFFDSERYDLSAVGRVKMNMRLG
LDAEDTVRTVRKEDIVEVVRTLLQLRDGNGEVDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKVVEGKVTDEVVYLSAMEEAKHHVAQANAEIGDNGELTSEFVIVRHAGDVMMTPRETV
DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPYVGTGMEAIVAR
DSGAAIAARRSGIVDQVDAMRIVIRATEELDPGEPGVDIYRLQKFQRSNQSTCINQRPLV
KVGDRIEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERVVRDDVFTSI
HLEEYEVNARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVGPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGGFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQSILDRNTYGRLADMLTGNEAIAGPKGFKKGTKIDQQVLDSYPRSNWW
QFAVADEKRQDGLEQLRNQYDETKKQLEQRFMDKVEKVQRGDEMPPGVMKTVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRILPNEDMPFLEDGQHVDIVLNPLGVPSRMNVGQILETHLG
WACAGMGRKIGEMLEAYREAGDIKPLRATLEDIIPDNNRNEPVRKMDDESVLKVGEQFAN
GVTIATPVFDGAIEPEINAMLEKAGLEDSGQSTLYDGRTGEAFDRQVTVGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELSSTRPVADDTQEALPDAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccatgactttcaacggtcgtagacgcgtacgcaagttcttcggtgacatt
cccgacgtcgccgagatgcccaacctgatcgaggtgcagaaggcctcctacgatcagttc
ctgatgatggacgagcccgagggcgggcgtccggacgaaggcctgcaggccgccttcaag
tcggttttcccgatcaaggattttgccggtaccgcacagctcgatttcgtgcgctacgac
tatgaggcgcccaagttcgacgtcgaggaatgccgccagcgcgacctgacctattcggcg
ccgctcaaggtgacgctgcgcctgatcgtcttcgatatcgacgaggacaccggcgccaag
tcggtcaaggacatcaaggagcaggacgtctatatgggcgaaatgccgctgatgacgtcc
aacggcaccttcatcgtcaacggcaccgagcgcgtgatcgtctcgcagatgcaccgctcg
cctggcgtcttcttcgatcacgacaagggcaagacccactcgtcgggcaagcttctgttc
gccgcccgcgtcatcccctatcgcggatcgtggctcgatatcgagttcgatgccaaggat
gtcgtgcatgcgcgcatcgaccggcgccgcaagatcccggtcacctcgctgctgatggcg
ctcggcatggatgccgaggaaatcctgtcgacctactacgacttcgtcacctatgagcgc
gacggcgaagcctggcgcattccgttcaacgccgacagcctgaaaggcaccaagcccgcc
gtcgacctgatcgatgcggattcgggcgaggtcgtcgtcgaagccggcaagaaggtgaca
gcgcgcaccgtcaagcagctcgccgaaaagggcatcaaggcgctcaaggcgaccgatgag
gagctgtacggctcctatctggccgaggacatcgtcaatcccgaaaccggcgagatctac
ctcgaagccggcgacgagatcgacgagaagacgcttgccgtgctcatcgagagcggccag
accagcttcccggtgctcgacatcgaccacgtcaatgtcggcccctacatccgctcaacg
ctggccgtcgacaagaacgagacgcgccaggacgcgctgttcgacatctaccgcgtcatg
cgtccgggcgagccgccgaccatggaaacggcggaagccatgttccagtcgctgttcttc
gattccgaacgctacgatctgtcggcagtcggccgcgtcaagatgaacatgcgtctcggc
ctcgatgccgaggacaccgtgcgcaccgtgcgcaaggaagacatcgtcgaggtcgtgcgc
acgctgctgcagcttcgcgacggcaatggcgaagtcgacgacatcgacaatctgggcaac
cggcgcgtgcgctcggtcggcgaactgatggaaaaccagtatcgcgtcggccttttgcgc
atggagcgggcgatcaaggaacgcatgtcctcgatcgacatcgacaccgtgatgccgcag
gacctgatcaacgccaagccggcggccgccgccgtccgcgagttcttcggttcctcgcag
ctttcgcagttcatggaccagaccaacccgctttccgagatcactcacaagcgccgcctg
tccgcgctggggccgggcggtctgacccgcgagcgcgcgggcttcgaagtgcgcgacgtg
cacccgacccactatggccggatctgcccgatcgagacgcccgaaggcccgaacatcggc
ctgatcaattcgctggccaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaaggttgtcgaaggcaaggtgaccgacgaggtcgtctatctgtcggccatggaa
gaggccaagcaccacgttgcccaggccaatgccgagatcggcgacaatggcgaactgacg
agcgaattcgtcatcgtccgccatgccggcgacgtgatgatgacgccgcgcgaaacggtc
gatctgatggacgtttcgcccaagcagctcgtgtcggtcgccgccgcgctgatcccgttc
ctcgagaacgacgatgccaaccgcgccctgatgggctcgaacatgcagcgtcaggccgtg
ccgctggtgcgcgccgaagcgccctatgtcggcaccggcatggaggcgatcgtcgcccgc
gattcgggtgccgccattgccgcgcgccgttcaggcatcgtcgaccaggtcgatgcgatg
cgcatcgtcatccgcgcaacggaagagctcgatccgggcgagccgggcgtcgacatctac
aggctgcagaagttccagcgctccaaccagtcgacctgtatcaaccagcgcccgctcgtg
aaggtcggcgaccggatcgaaaagggcgatatcatcgccgacggtccctcgacggacctg
ggcgatctggcgctgggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaac
tacgaggattcgatccttctgtccgagcgcgtcgtgcgcgatgacgtcttcacctcgatc
cacctcgaggagtatgaggtcaacgcccgcgacaccaagctcggccccgaggagatcacg
cgcgacattccgaacgtgtcggaagaggcgctgaagaacctcgacgaagccggcatcgtc
tatatcggcgccgaagtcggccccggcgacatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcgtcc
gacgtgcgcgacacctccatgcggatgccgcccggcggcttcggcacggtcgtcgaggtg
cgcgtcttcaaccgccacggcgtcgaaaaggacgagcgcgccatggcgatcgagcgcgag
gagatcgaacgtctcgcaaaagaccgcgacgacgagcagtcgatcctcgaccgcaacacc
tatggccgcctcgccgacatgctcacgggcaatgaggcgatcgccgggcccaagggcttc
aagaaaggcaccaagatcgaccagcaggttctggacagctatccgcggtccaactggtgg
cagttcgcggttgccgacgagaagcgccaggacggtctggagcagctgcgcaaccagtat
gacgagaccaagaagcagctcgagcagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgacgagatgcctccgggcgtgatgaagaccgtcaaggtcttcgtcgccgtcaagcgc
aagatccagcccggcgacaagatggccggccgccacggcaacaagggtgtcgtctcgcgc
atcctgcccaacgaggacatgccgttcctcgaagacggccagcatgtcgatatcgtgctg
aacccgctcggcgtgccgtcgcgcatgaatgtcggccagatcctggaaacccatctgggc
tgggcctgcgccggcatgggccggaagatcggcgagatgctggaagcctaccgcgaggcg
ggcgacatcaagccgctgcgcgcgacgctcgaagacatcattccggacaacaaccggaac
gagccggtgcgcaagatggacgatgaaagcgtgctcaaggtcggcgagcagttcgccaac
ggcgtgacgatcgcgaccccggtcttcgacggggcgatcgagcccgagatcaacgccatg
ctggaaaaggcggggcttgaggacagcggtcagtcgaccctttatgacggccgcacgggc
gaagcgttcgaccggcaggtgacggtgggctacatctacatgctcaaactccatcacctt
gtcgacgacaagatccacgcccgctcgatcggcccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaggtctgggcgctg
gaagcctatggcgccgcctacacgctgcaggagatgctgaccgtcaagtcggacgacgtg
gccggccgcaccaaggtctacgaggccatcgtgcgcggcgacgacacgttcgaggcgggc
attcccgagagcttcaacgtgctcgtcaaggaaatgcgctcgctgggcctgaacgtggag
ctgtcctcgacccgtcccgtggccgacgacacccaggaagcgctgcccgacgcggccgaa
tag
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integrated database retrieval system
