Ostreococcus tauri: OT_ostta07g03420
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Entry
OT_ostta07g03420 CDS
T01358
Name
(RefSeq) CCR4-Not complex component, Not1, C-terminal
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta07g03420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta07g03420
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OT_ostta07g03420
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
OT_ostta07g03420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
9836604
NCBI-ProteinID:
XP_022839471
OrcAE:
OT_ostta07g03420
UniProt:
A0A090M7X3
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All DBs
Position
7:542175..547574
Genome browser
AA seq
1799 aa
AA seq
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MGDGGGKSAFDGARGMSVASTAEALEELGYAASYAKDGLVEILGKLPRLDDVGLAKVLGM
VCRTTAGLDQANGGDAMASLAKAAGIAAPSAEALRMTTWNGDAVVDAVNAAYKELNWDNA
MENLDQPEFGCPTEASFRVLCGMYSRATGKSFPAKALCAAPWGKNQSGQIQALRQLLGST
REQCDWADLKHVDVEGTTVGPWACVELMATLGALSEKGHRDAARGALEPGSSRSPETVCI
TLSQACDEHNTLARDAFGALLPPYVAAAHPKAGLVLRNVWGKHSVAVIRAMVDAHSSSPA
AAERIFEVCQELNALNVVIERSPFPLAIEMVTIASRKVGVNLEQWIQEKIKASGAASVSA
CMRFLRARAMQEGTEKGGAPLASDVVQIFMKVLLGVASSMPPDLQAELRQLITQIQNSPN
KGRDASADDMAAQAGTAQGFSADIEEEANRYFQRVYSQQQSIGELVEVLRNFRASLVQRE
RDIFSCMVHNLFDEYKFFPKYPEKELRITAVLFGQLILHNLVSNITLGVALRCVLDALRK
PQGSKMFAFGSDALEQFKRRLAEWPQYCQHLAQIPHLPQAHPDLMPLFAKGGDQTVALGR
SEPSMNTAANADAQLAAGVAGMRLGDGEGNNSPLPRSLSSAVNIGVPPQPPGPPPPGEVG
PKAPTRGQSQPQLARVSSGGQMSNISNAPSGFATSLNIDTLVAANAEAVQADSATADKVH
FLVNNLSAENVEEKSAEVKAKVTADLYEWFAGYLVVKRASIEPNYHTLYLELLDKIGEKA
LYKAILHATYRNIKVLLSSGKVKTNSGERSLLKNLGSWLGQLTIAKCKPVLQRDLDVKAL
ILESYESGRMIGVVPFVAKVLEPCKANMIFRPPNPWTMAILSLLCEIYNERDLKLNLKFE
MERLFKHLEVNIKDVEPSTLLVSRMRERINNPDFVADKNFAPPPASHSASSEGSLQQSSV
GSRGMDEEEKSRLQTQSLEGALPNMQAHVRVAAAPNLPESTRAAIVRLLPVALTQGIREI
VVPVVERSVTIACKTTQELVRKDFATEVDINRVRKAAHLMVSSLAGSLALVTCREPLKAS
VANQLRALLQQSGAGAGAETAALEAAVQSATVDNLELGCVLIEKAASEKSIRDIDELLAP
AAIVRQKHRESGVNQPFFDASIMQGQHLALPESLRPRPGQLPTAALRIYDDFAQLPRAPP
PPPSGAPPAFARQPFGQQPPPPPVAYPGMPPPPPPGAPPPLPPDAPEGSTEAPTEAAKDA
SKTLSTGTHPHGQPDPAGLREKVAAHFDEWARVQDLPPTDVASVAFIQRLVESRLLAEDT
QERFLRILVELAVTHCLSSEVPGATPQASSQLSFAAIDAYVRLVIRLVRRKEEPLASRLA
FFGRALVAIVRTAMRDTDERNVAFNARPYFRALAGLLNEMHPSDTALDSSHPQVLAAFAS
AFLALQPLRVPGFAFAWLELVSHRCFMPRLLIDHEQKGWPLLQRLLTAILRFMEPHLRTA
DLSEPIKLLYKGMLRMFLVLLHDFPEFLCNHHVNFCDIIPPNCIQLRNLVLSAYPRNMRL
PDPFTPNLKVDLLPEIQQAPRMNADADHAFRSSPMREEVDSFLKTRKPENSSQLLVHRLT
LSPSAALTAGTKYNVPLLNAFVLYVGVQAIQANRNKDASSGIAQSAPMELFSQLIQAFDM
EGRYLFVNAIANQLRYPNCHTHYFSCVILYLFSEAKFGIIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPRYNFWGHSFTKCSPEIERLFESVARSCLPQDKEGTAQSKPVPVHAS
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacggtggagggaagagcgcgttcgatggcgcgcgggggatgtcggtggcgtcc
accgcggaggcgctcgaggagttgggctacgccgcgtcgtacgcgaaggatggattggtt
gaaattctagggaagctgccgaggctggacgacgtcggcttggcgaaagtgctcggtatg
gtgtgcaggacgaccgctgggttggatcaggcgaacgggggggacgcgatggcttcgttg
gccaaggcggcggggatcgccgcgccgagcgcagaggctttgaggatgactacgtggaac
ggggacgcggttgtggacgcggtgaacgcggcgtacaaggaattaaactgggataacgcg
atggaaaacctcgaccagcccgagtttggatgtccgacggaggcctctttccgagtgttg
tgcgggatgtactccagggcgactggtaagagcttcccggcgaaggcgttgtgcgctgcc
ccgtggggtaagaatcagtcgggtcagattcaggctttgcgccagctcttgggctcgacc
agagaacagtgcgattgggcggatttgaaacacgtcgatgttgagggtacgacagtgggg
ccatgggcgtgtgtagagttgatggcgactctcggagcgctgagtgagaagggacaccga
gacgcggcgcggggggctctcgagcctggctcgagcagatcgccggagactgtgtgtatc
accctctcgcaggcgtgcgatgagcacaacacgctcgctagggacgcgtttggcgcgctc
ttgcccccgtacgtggcggcggcgcacccaaaggctggcttagttttgcgcaacgtgtgg
gggaagcactccgtggctgtgattcgcgccatggtggacgctcactcttcctcgcccgcg
gcggcggagcgcatcttcgaggtgtgccaagagttgaacgcattaaatgtcgtcatcgaa
cgatctccgttcccgctcgcgatcgagatggtaacgatcgcgtcaaggaaggtcggcgtc
aacctggagcagtggatacaggaaaaaatcaaggcgagcggcgccgcttctgtgagcgcg
tgcatgcgattcttgcgcgccagggcgatgcaggagggtactgaaaagggcggtgcgccc
ctcgcatcggatgtggtccagattttcatgaaggttctcctgggcgtggcttcgagcatg
ccgcccgatttgcaagcagagttacgtcaactcatcacgcagattcaaaactcccccaat
aagggtcgagacgccagtgcggatgatatggcggctcaagccggcaccgcgcaaggattc
agcgcggacatcgaagaggaggcgaaccgctatttccagcgcgtgtactctcagcagcaa
tccatcggtgagttggtggaggtgttgcgaaacttccgggcgagcctggtgcaacgcgag
agagatatcttctcttgcatggtgcacaacctgttcgatgagtacaagttctttcccaag
tacccggagaaggaacttcgaatcaccgccgtactcttcggacagcttatcctgcataac
cttgtcagcaacatcaccctcggcgtcgccttgcgatgcgtcttggacgcgcttcgcaag
ccgcaagggtcgaaaatgttcgcctttggctccgatgcgctcgaacaattcaagcgtcga
ctcgcagagtggccgcagtactgtcagcacttggctcagatcccacacctgccccaggcg
catccagacttgatgccgctcttcgccaagggtggcgatcaaacagtggcactcggtcgc
agcgagccaagcatgaacaccgccgcgaacgcggacgcgcagctcgccgctggcgtcgct
ggtatgcggcttggcgatggtgaaggaaataactcacctttgccgcgctcgttatcgtcg
gcggtgaacatcggtgtgcccccgcaaccaccaggaccaccaccgccgggcgaggtgggg
ccgaaggcgccaactcgaggccagagccaaccgcaactcgctcgggtgtccagcggagga
cagatgtcgaacattagcaacgcgccgagcggattcgcaacgtcgctcaacatcgacacc
ctggtcgccgcgaacgccgaggctgtacaagctgactcggcaaccgcggacaaggtgcac
tttttggtgaacaatctctccgcggagaatgtggaggaaaagtcggccgaagtcaaggct
aaggtcactgccgatctatacgagtggtttgcgggatatcttgtcgtcaagcgcgcgtcg
attgaaccgaactaccacactttgtacctcgagttactcgacaagataggcgagaaggct
ttgtacaaggctattttacacgccacttatcgtaacatcaaggtcttgctgtcgagcggt
aaggtaaagacgaacagcggtgagcgaagcttgctcaagaacctcggctcttggctcggt
cagcttaccatagcgaagtgcaaaccagtgttgcagcgtgatttggacgtcaaggctttg
atcctggagagctacgaatcgggtcgcatgattggcgtcgtcccgttcgtcgccaaggtg
cttgaaccgtgcaaggctaacatgatcttccgtcctccgaatccgtggacgatggcgatc
ttatcgctattgtgcgaaatctacaacgagcgagatctcaagttaaacctcaagttcgag
atggagcgtctgttcaaacacttggaagtcaacatcaaggacgtcgagccgtcgactttg
ctggtgtctcgcatgcgtgagcgcatcaacaaccccgactttgttgcggacaaaaacttc
gccccaccgccagcctcacattcggcttcgtcggaagggtcgttgcaacaaagcagcgtc
ggcagtcggggcatggacgaagaagagaagagccgattgcagacacaaagtctcgagggc
gccttgccaaacatgcaagcacacgttcgtgtcgctgcggcgccgaacctccccgagtcc
actcgggcggcaatcgttcgtctcctaccggtggctttgacgcagggtattcgagaaatc
gttgttcctgtcgtcgagcgttcggtcacgatcgcgtgcaagacgactcaggagttggta
cgaaaagatttcgccacggaggtcgacatcaaccgcgttcgcaaagcggcacatctcatg
gtttcttccctcgccggctctctagctttggtcacttgccgagaacctctcaaggcgagc
gtcgcaaatcagcttcgagcgctgttgcaacaatccggcgccggtgctggcgccgagacg
gctgcgctcgaggctgcagttcagtctgctacggttgataacctcgagttgggttgtgtc
ctcatcgaaaaggcggcttcggagaagtcgattcgagacatcgatgaacttcttgcgcct
gcggcgatagttcgtcagaagcaccgcgagtctggggtcaaccagccgttcttcgatgct
tccatcatgcaaggtcagcacctggcgcttccagaatcgctcaggcctcgacctgggcag
cttcccaccgcggcgcttcgcatctacgacgacttcgcgcagctcccccgcgcgccgccg
ccgccgccttctggcgcgccacctgcgttcgctcgacaaccgttcggtcagcaaccgccg
ccgccacccgtggcttatccaggcatgccgccaccaccgccaccgggcgcgccaccgccg
cttcccccagacgcgcccgagggctccacggaagccccaacggaagcagcgaaggatgca
tcgaagactctatcgactggaacacatccgcacggtcaaccagatcccgctggattgcgc
gagaaggtcgccgctcacttcgacgagtgggctcgagttcaggacttgccgccgacagac
gtggcgagcgttgcattcattcagcgattggtcgaatctcgactgctcgcagaagacacg
caagaacgtttcttgcgcatcttggttgaactcgcagtgacacactgcctcagcagcgag
gttccgggtgcgacgccgcaggcgagctctcagctctcgttcgccgcgattgacgcctac
gtgcgcctcgtgattcgattggttcgtcgcaaggaagagccgctcgcttcgcgactggcg
ttcttcggtcgggccttggtagccatcgtgcgcacggcaatgcgtgatacggatgaacga
aatgtggcttttaacgcccgtccgtacttccgcgctctcgctggcttgctgaacgagatg
cacccctcggacacggcattggactcctctcatcctcaggtcctcgcggcgtttgcgtcc
gccttcttggcgctgcaaccgcttcgtgtgcccggtttcgcgtttgcctggctcgagctc
gtctcgcatcgctgcttcatgccgagacttttgattgatcacgagcaaaagggttggccg
ctcctgcagcgcctcttgacggcgattttgcgcttcatggagccgcacttgcgcacggct
gatctctctgagccgatcaagttgctttacaagggtatgctgcgcatgttcttggtgctc
ttgcacgacttccctgagtttttgtgcaaccatcacgtgaacttttgcgacataatcccg
cccaactgcatccagttgcgcaacttggtgttgtccgcgtacccgcgaaacatgcgactt
cctgacccgttcacacccaacttgaaggttgatttgcttccggagattcaacaggcgccg
agaatgaacgccgacgctgatcacgcgttccgctcctcgcccatgcgcgaggaagtggac
tcgttcctcaagactcgaaagcctgagaactcgagccagctcttggttcatcgcttgacg
ttgtcgccatccgccgccctcactgcggggacaaagtacaacgttccgctgctcaatgct
ttcgttctctacgtcggcgtccaggcgatccaggccaaccgaaataaggacgcatccagt
ggcatcgctcagagcgctcccatggagctcttctcgcagctcattcaagcgtttgacatg
gagggtcgttatctcttcgtcaacgcgatcgcgaaccaacttcgctatccgaactgccac
acgcactacttctcgtgcgtgatcttgtacttgttctccgaagccaagttcggaatcatt
caagagcaaatcacgcgcgtgctcctcgaaagactgatcgtgaaccggccgcatccgtgg
ggtttgttgatcaccttcatcgagctcatcaagaatccgcgatacaacttctggggacac
tctttcaccaagtgctcaccagaaatcgagcgacttttcgagtctgtcgctcgctcgtgc
ttaccgcaagacaaggaaggtaccgcgcaaagtaagccggtgccggtgcacgcgagctaa
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