Octadecabacter temperatus: OSB_02560
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Entry
OSB_02560 CDS
T04001
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
otm
Octadecabacter temperatus
Pathway
otm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
otm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSB_02560 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otm03021
]
OSB_02560 (rpoB)
03400 DNA repair and recombination proteins [BR:
otm03400
]
OSB_02560 (rpoB)
Enzymes [BR:
otm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OSB_02560 (rpoB)
Transcription machinery [BR:
otm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OSB_02560 (rpoB)
DNA repair and recombination proteins [BR:
otm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OSB_02560 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AKS44824
UniProt:
A0A0K0Y1K7
LinkDB
All DBs
Position
229201..233343
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDSDTPLDGEGIKGVFQSV
FPIKDFNETSVLEFVKYELEKPKYDVEECQQRDMTYAAPLKVTLRLIVFDIDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGLDQETIMNAYYDHVDYTFDK
KAKAWKTKFFPERVRGTRPLFDLVDAKTGEVIAEAGKKVTPRAVKALIDAGEVTELLVPY
EQIVGKFAANDIINEETGAIYVEAGDELTLEYDKADELIGGTLKELIDAGVKTIPVLDID
NINVGPYMRNTMAADKNMGRETALMDIYRVMRPGEPPTVDAASTLFDSLFFDSERYDLSA
VGRVKMNMRLALDAEDTMRTLRKEDIVSCIKALVELRDGKGDIDDIDHLGNRRVRSVGEL
MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN
PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA
RVNKYGFIETPYRVVTDGKVTDEVHYMSATEEMRHTVAQANANLNEDMSFVNDLVSTRQN
GEYTLAQNSTVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLQAEAPL
VGTGIEEVVARDSGAAIMAKRGGIIDQVDATRIVVRATSDLTVGDPGVDIYRMRKFQRSN
QNTCINQRPLVKVGDTVLKGEVIADGPSTDIGELALGKNVVVAFMPWNGYNYEDSILISE
RIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVEPG
DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVE
KDERALQIEREEVERLARDRDDEMTILDRNIYARLRTMMGGKTVAKGPKGIKTGATIDDA
MLEELPRSHWWQIALKEEGDAQIVEALNEQYEAQKKLLDARFEDKVEKVRRGDDLPPGVM
KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLQDGTPVDFCLNPLGVPSRM
NVGQILETHMGWAARGLGIEIDEALGEYRRNGDLSPVKEAMKIAYGEDVYSEGVADMTDD
ELIEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFSRKVTV
GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAAEDDE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacattcctcggccagaaacgcttgcgcaaatactacggtaaaattcgcgaa
gttctcgacatgccgaacctcatcgaggttcagaagtcctcctatgacctgttcctgcgc
tccggcgacagcgacacaccgcttgacggtgaaggcatcaagggcgtctttcaatcggtt
ttcccgattaaagatttcaatgaaacatcggttctggagttcgtaaaatacgagcttgag
aagccaaagtacgacgttgaagagtgccagcagcgcgacatgacatatgccgctccgctt
aaggttacgctccgtcttatcgtgtttgatatcgatgaagatacaggcgcgaagtccgtt
aaggacatcaaagaacaagacgtattcatgggcgatatgcctttgatgacaccaaacggt
acgttcgttgtgaacggcaccgagcgggtgatcgtctcccagatgcaccgctcgcctggt
gtgttctttgaccacgacaaaggtaagtcgcacagctcgggcaaattgttgttcgcttgc
cgcatcatcccataccgcggtagctggttggacttcgaattcgacgcgaaagaccttgtg
ttctgccgcatcgaccgtcgtcgcaagcttcctgtaacaacactgctctatgcgctgggc
cttgatcaagaaacgatcatgaatgcgtactacgaccacgttgattacacattcgacaaa
aaagcgaaggcttggaaaaccaagttcttcccagagcgcgtgcgcggcactcgcccactg
ttcgatctggtagacgccaagactggcgaagtgattgccgaagctggcaagaaggtcact
ccgcgcgctgttaaggcactgatcgacgccggtgaggtcaccgaattgctcgtcccatac
gagcagatcgttggcaaattcgcagcgaacgacatcatcaacgaagaaactggtgcgatt
tacgtcgaagccggtgatgagttgacgcttgagtacgacaaagcagacgagctgatcggc
ggtacgctgaaagaactcatcgacgctggtgtgaagaccattccggttctcgacatcgat
aacatcaatgttggcccgtacatgcgcaacaccatggcggcagacaagaacatgggtcgc
gaaacagcgctcatggacatctaccgcgttatgcgcccgggtgagccaccgaccgttgat
gccgcgtccacattgttcgacagcctgttctttgactctgaacgttacgacctctctgct
gttggtcgcgtaaagatgaacatgcgtcttgcactggatgccgaagacaccatgcgcaca
ttgcgcaaggaagacatcgtatcctgcatcaaagcgctggttgaactgcgcgacggcaaa
ggcgacatcgacgatattgaccaccttggtaaccgtcgtgtgcgttccgttggcgaactt
atggaaaaccagtaccgcgttggtctgctccgcatggagcgcgccatcaaggaacgtatg
tcttccgttgagatcgacacggttatgccgcaagaccttatcaacgcgaagccagccgct
gctgcggtacgtgaattcttcggttcctcgcagctgtcgcagtttatggaccaaaccaac
ccgctttcggaagttacgcacaagcgtcgcctttccgcgcttgggccaggtggtctgaca
cgcgaacgtgctggttttgaagtacgtgacgttcacccaacacactacggccgcatgtgt
ccaattgagacaccggaaggcccaaacattggtctgatcaactcactggcaaccttcgcg
cgtgtgaacaagtatggcttcatcgagacaccgtaccgcgttgtcacagacggcaaagtt
acggacgaagtgcactacatgtccgcgactgaggaaatgcgccacactgttgcgcaggcc
aacgcgaacctgaacgaagacatgtctttcgtgaacgacctcgtgtcgacacgtcagaac
ggcgaatacactttggcgcaaaacagcactgtcgatttgatcgacgtgtcgccaaagcag
ctggtctccgtagctgcgtctttgatcccgttccttgaaaatgacgatgcgaaccgggcc
ctgatgggttcgaacatgatgcgtcaggcggttccattgcttcaggctgaggctccgctg
gttggtactggtatcgaagaagtcgttgctcgggattccggcgctgcgatcatggcgaaa
cgtggcggtatcatcgaccaagtcgatgcgacacgtatcgttgttcgcgcgacgtccgac
cttacggttggtgaccctggcgttgacatctaccgcatgcgcaagttccagcgttccaac
caaaacacctgcatcaaccagcgtccgttggttaaagttggtgatactgttcttaaaggc
gaagttattgctgacggtccatccacggacatcggtgaactcgcacttggtaaaaacgtg
gtcgtcgcgtttatgccttggaacggctacaactacgaagactccattctgatctccgaa
cgcatcgtacgtgacgacgtatttacttcaatccacatcgaagaattcgaagtcgctgct
cgtgatacgaagctcggcccagaagaaatcacacgcgatattccaaacgtcggtgaggaa
gccctacgcaacctcgacgaagcgggtatcgtttacatcggtgcagaagttgaaccgggt
gatattcttgttggtaagatcacaccaaaaggcgaaagcccgatgacgccggaagaaaag
cttctgcgcgccatctttggtgaaaaagcgtctgacgttcgtgacacatccttgcgcgtt
aagccgggtgattttggtacggtcgttgaagttcgtgtgttcaaccgccacggcgttgaa
aaagacgaacgtgcgcttcagatcgagcgtgaagaagtcgaacgtcttgcacgtgaccgc
gacgatgagatgacgatccttgatcgcaacatctacgcgcgtctgcgcacaatgatgggc
ggcaagactgttgctaaagggccaaagggcatcaagacaggcgcgacaattgacgacgct
atgcttgaagaactgccacgcagccactggtggcagatcgcccttaaagaagagggtgac
gcacagatcgttgaagcccttaacgagcagtacgaagcacagaaaaagcttctcgatgca
cgttttgaagacaaggtcgaaaaagtacgtcgcggcgatgatctgccaccaggcgtgatg
aagatggttaaagtcttcgttgcggtgaagcgtaagcttcagcctggcgataagatggcg
ggtcgtcacggcaacaaaggtgttatttccaaggttgtaccaatggaagacatgccgttc
ttgcaggacggtacaccagtcgacttctgtctgaacccactcggcgttccatcacgtatg
aacgttggtcagattctggaaactcacatgggttgggccgcacgcggtctcggcattgag
attgacgaagcgctcggtgaataccgtcgcaacggtgatctctcaccagtgaaagaagcc
atgaagattgcttacggcgaggatgtttattccgaaggcgtggctgacatgacggacgat
gagctgatcgaagctgctggtaacgtcacacgtggtgttccaatcgcgacgcctgttttt
gacggcgcgaaagaagctgacgtgaacgatgcgctgacacgcgctgggttcgacacgtct
ggtcagtctgtcttgtttgacggtcgcacaggcgaacagtttagccgtaaggttactgtt
ggcgtgaagtacctgcttaagctgcaccaccttgtcgatgacaagatccacgcccgttcc
acgggtccgtactccctcgtcacgcagcaaccgctgggtggtaaggcacagttcggtggt
cagcgctttggtgagatggaagtctgggctctcgaagcttacggcgccgcttacacattg
caggaaatgttgactgttaagtctgatgacgttgctggccgcaccaaggtctacgaaagc
atcgttaaaggcgaagacaacttcgaagctggcgtgccagaatcgttcaacgttctcgtg
aaagaagtacggggcctcggcctcaacatggaactcctggatgccgcggaggacgacgaa
tag
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integrated database retrieval system
