Oncorhynchus tshawytscha (Chinook salmon): 112218524
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Entry
112218524 CDS
T05605
Name
(RefSeq) nuclear pore complex protein Nup93 isoform X1
KO
K14309
nuclear pore complex protein Nup93
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112218524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112218524
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112218524
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
RESC9_N
Motif
Other DBs
NCBI-GeneID:
112218524
NCBI-ProteinID:
XP_024235145
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Position
LG19:complement(24934674..24966159)
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AA seq
844 aa
AA seq
DB search
MTFWKTRHHPITVDLRSAGVKLVAMEAEGFGELLQQAEQLAAETEAVSELPHVERNLQEI
QQAGERLRSRTLTRTSQDAADVKASILLGSRGLDIFHISQRLESLSAATTFEPLEPVKDT
DIQGFLKNERDNALLSAIEESRRRTFLLAEEYHRESMLVQWEQVKQRVLHTLLGAGEDAL
DFSQDIEPSFVSDAGVPGRSALDSVEVAYGRQIYVFNEKIVNGHVQPNLGDLCASVADSL
DDKNVSDMWLMVKQMTDVLLVPAKDTLKSRTALDMQMAFVTQALQFLQNSYKNYTMVTVF
GNLHQAQLGGVPGTYQLVRSFLNIKLPGPLPGMQDGEVEGHPVWALIYYCLRCGDLGAAM
QVVNRAQHQLGDFKTWFQEYMNSPDRRLAPATENKLRLHYRRVLRNCADPYKRAVYCLIG
KCDIADNHGEVADKTEDYLWLKLNQVCFDDDGSSAPQDRLTLAQLQKQLLEDYGESHFSA
SQQPFLYFQVLFLTAQFEAAVAFLFRVERLRSHAVHVALVLYELRLLLKSSGQSAQLLSQ
EAGDPPMVRRLNFIRLLMLYTRKFESTDPREALQYFYFLRNEKNNQGENMFMCCVSELVI
ESREFDMLLGRLEKDGSRKPGVIDKFAGDTRAIITKVALEAENKGLFEEAVRLYELAKNP
DKVLELMNRLLSPVIAQVSAAQSNKERLKNTAVAIAERYRNQGVAGEKSADSTFYLLLDL
MTFFDEYHAGNIDRAYDVMERLKLVPLSQDSVEERVAAFRNFSDEVRHNLSEVLLATMNI
LFTQCKRLKGAAAGTPGRPQRSMEDRDSQLRSQARALITFAGIIPYRMAGDTNARLVQME
VLMN
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgacgttttggaaaacgagacatcatccaatcaccgtagacctcagaagtgccggggta
aaattggttgccatggaagcggagggctttggagaactcctgcagcaggcagagcagctt
gcagcagagactgaggccgtgtctgagcttcctcatgttgagaggaaccttcaggagatc
cagcaggctggagagaggctacgctcccgcaccttaactcgaacatcacaagatgctgct
gacgtgaaagcgtccatcctccttgggtccagaggcctggacatcttccacatctcccag
cgtctggagagcctgagtgctgccaccacctttgaacctctagagccagtgaaggacact
gacatccagggctttctgaagaatgagagggacaatgcgctgctctctgccatcgaggag
tcacgtcgcaggacgttcctcttggcagaggagtaccaccgcgagtccatgctggttcag
tgggagcaggtgaagcagagagtactgcacaccctgttgggagcaggggaagatgctctg
gacttcagccaagacatagagcccagctttgtgagtgacgcaggagttcctggacggagt
gctcttgacagcgtggaggtggcctatggacgacagatctacgtttttaatgagaagata
gtgaatggacatgtccagcccaacctgggagacctctgtgcctcagtggcagacagcctg
gatgacaagaatgtgtcggacatgtggttaatggtgaagcagatgacagacgtgctgctg
gtcccagccaaagacacgctgaagagccgcacggccttggacatgcagatggctttcgtc
acgcaggccctgcagttcctgcagaacagctataagaactacaccatggtgacggtgttt
gggaacctgcaccaggcccagctaggaggagtccctggcacctatcagctggtgcgcagc
ttcctcaacatcaaactgccagggcctctgccaggcatgcaggatggtgaggtggagggt
cacccagtctgggctctgatctactactgcctgcgctgtggggacctgggggctgccatg
caggtggtgaaccgggctcagcaccagctgggagacttcaagacctggttccaggagtac
atgaacagccctgacagacgcctggcccccgccacagagaacaagctgcgtctccactac
cgcagagtgctgaggaactgtgctgacccctacaagagggccgtctactgcctcattggg
aagtgtgacatcgcagacaaccatggagaggtggccgacaagaccgaggactacctgtgg
cttaagctcaaccaggtgtgcttcgatgacgacggcagcagtgctcctcaggatagactg
acattggcccagctacagaaacagcttctagaggactacggagagtcccacttctcggcc
agccaacagccgttcctgtacttccaggtgctgttcctcacggcccagtttgaggctgct
gtggccttcctgttccgggtggagcgtctacgcagtcatgcagttcacgtggctctggtt
ctctacgagctacggctgctgctcaagtcatcagggcagagcgcacaactgttgagtcag
gaagctggggacccccctatggtgcgtcggctcaacttcatccggctgctcatgctctac
acgcgcaagtttgagtccacagacccccgggaggctctacagtacttctacttcctacgg
aatgaaaaaaacaaccaaggagagaacatgttcatgtgctgtgttagcgagctggtgatt
gagagtcgagagtttgacatgcttctgggaagactggaaaaagatggcagcagaaagcct
ggagtgattgataaatttgccggagacactcgagccattatcacaaaagtggcgctggag
gctgagaacaagggcctgtttgaggaagcagtaagactgtatgagctggccaagaatcca
gacaaggtcttagagctgatgaacaggctgctgagtcctgttatcgcccaagtcagcgct
gcccagtccaacaaggagagactgaagaacactgctgttgccatcgctgagcggtaccgg
aaccagggtgttgctggagagaagtctgcagacagcaccttctacctgctgctggacctc
atgaccttctttgatgagtaccatgctggaaacatagaccgggcctacgatgtgatggag
agactgaagctggtccctctgagtcaagacagtgtggaagaaagggttgctgcatttcgc
aatttcagtgatgaggtcaggcataatctgtcagaggtactcctggccaccatgaatatc
ctgttcacgcagtgcaagcgcctgaagggggccgcagcaggaacccctggtcgaccacag
aggtccatggaggacagagactcgcagctgcgcagccaagcccgtgcactgatcacgttt
gctgggattatcccgtaccgcatggcaggcgacaccaatgcccggctggtgcagatggag
gtcctgatgaactga
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