Oncorhynchus tshawytscha (Chinook salmon): 112218788
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Entry
112218788 CDS
T05605
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112218788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112218788
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112218788
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112218788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
112218788
NCBI-ProteinID:
XP_024235694
LinkDB
All DBs
Position
LG19:41808100..41848309
Genome browser
AA seq
2427 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQDIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDTFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVTQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQALSQPPKAPQPGQPSTLVTTATTTTTVAKTTTITRPTPGSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV
IFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGILLKDKDKLK
RLEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPIVGDFLPFAAAPSTPAATTTCSATG
PPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
SFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQP
TGFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALAR
NSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSQWCNKQI
TRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLL
VDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNF
MMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILK
TDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHS
GEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLET
INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
LFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRN
LILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPV
TFLSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTML
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEI
EKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagaaaaactacagagccagccagcaggatatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttgttacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ttaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgcttctctctcatcttctttttggacagaagggagccagcggggtcggacaa
gagcagattgacacgttcctcaagacactgtgcagagatttcccacaggagcgctgccct
gtggtgcttgcaccactgctataccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagcctcgatgaatgccgcaacataatcctacagtat
ggggtgcgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctatgag
cttgaccaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaattgacatactgaaggccccacctgaggac
gataatcgagagatagccacctggaagagcctggacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacatcctggcacaccctgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatc
ttacactacgcctggcatggacagggccagtccccctctatccgtcagctgatcatgcac
tctatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgcttaatggtactccatttgcc
ttcgttatcgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaagaccag
cccaaaagcgccctccttcccccagaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtcactcaagagctctctgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggccgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagtatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctccactgtccaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgcta
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgttgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gcccttcgatatgtactcgaagccttgaggaagccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgttggctcaagctcaggccttgtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagccaccaccaccaccactgtcgccaaa
accactaccatcacccggcctacccctggcagcttcaagaaggatgtgccgccatccatc
aacaccacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaa
cccccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaac
atgacacagaaggttgaggagttaaaggagactgtcaaagaagagttcatgccctgggtc
tctcagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactcc
aacttcttggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttac
agaaacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcc
ctactgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatc
ctgtacacagatttggaggtgaaatccctgttgttggaagcgtatgtcaaggggcagcag
gagctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtg
attttccgaccccagaatccctggacaatggccatcatgaatgtcctggcagagctgcat
acggagcatgatctcaagctgaatttgaagtttgagattgaggtgctgtgtaagaactta
tcattggacatcaatgacctgaagcctggcatccttctgaaggacaaagacaagttgaag
agactggaggaacagctctctgcaccaaagaaagaggccaagccacctgaagaaatgctc
cctgttgttagcacaggtatccagcactttcaaattgggatgcccattgtcggagacttt
cttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggt
ccccctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcc
cctcacatcaatatcaacatcaatatccccttgctccaagcccaccctcagctgaagcag
tgtgtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggaccgt
tccatcaagatcgccatgactacctgcgagcagattgtcaggaaggactttgccctggac
tccgaggagtcgcgcatgcgtgtggctgcccatcacatgatgcgtaacctgaccgccggc
atggccatgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaagaac
agctttgccgcagccctcagggcccccaccccccagcagagagagatgatggaggaggct
gctgctagggttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgca
gtggagaaggctggcccagagatggacaagagactagccacggagtttgagctgaggaag
cacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagag
cgcatgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcggtg
tacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagccc
actggattccttgcccagcccatgaagcaacaggcatgggccacagacgatgtggctcag
atttatgacaagtgcatggctgatctggagcagcacctccatgccatccccccagcgctg
gccatgaacccccagactcaagccctgcgcagtctgctggaggcagtggccctggccagg
aactcccgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctgctc
gatgccaccagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacttgctg
gtgctaaaagccctccaggacggccgggcatacggatcacaatggtgcaacaaacagatt
accaggtgcctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggagctg
ctgatcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatg
gagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctg
gtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagact
ctgatgagaaccagcgcacactccagggccaatgcacctgaggggcttcctcagctgatg
gatgtggtccgctctaactacgaggccatgatcgaccgggcccatggaggacccaacttt
atgatgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggag
aaggcggagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggccgg
gacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaag
acggatgacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagc
taccgcgcccaggccgagcagcagcacaatcctgcggccagcgccgccatcatcagagcc
aagtgctaccacaacctggatgcctttgttcgcctcatcgctctgctggtcaagcactct
ggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtg
gttggagtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttac
caccgcatcttcatcatgctgctgcttgagctcaatgcccccgagcatgtgctggagacc
atcaacttccagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaa
gcccctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgccagg
atgctggcacacacgccacagcagaagggttggcccatgtatgcccagctgctcattgat
cttttcaaatatctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatc
ctctacaagggtaccctgcgtgtcctgcttgtcttgctgcatgacttcccagagttcctg
tgtgactaccactacggcttctgtgatgtcatcccgcccaactgcatccagctccgcaac
ctgatcctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaatctg
aaggttgacatgctcagcgagatcaacattgctccacgcatcctcactaacttcaccgga
gtgatgccctctcagttcaagaaggatctggactcgtacctgaagacgcgctcccctgtc
accttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctgg
aagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgt
tacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacac
atccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatggac
atcttccagaacctggctgtggacctggacactgaggggcgctatctcttcctgaatgcg
attgctaatcagctgcgctacccaaacagccacacccattacttcagctgcaccatgctc
tacctgtttgctgaggccaacacggaggcaatccaggagcagatcaccagggttcttctg
gagaggctgattgtgaacaggcctcacccctggggactgctcatcacgttcatcgagctc
atcaagaaccctgccttcaagttctggagccacgactttgtgcactgtgccccggagatc
gaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtg
atggagggcactggtgccagttag
DBGET
integrated database retrieval system
