Oncorhynchus tshawytscha (Chinook salmon): 112221572
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Entry
112221572 CDS
T05605
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112221572
04120 Ubiquitin mediated proteolysis
112221572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112221572
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112221572
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
U-box type E3
112221572
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
112221572
NCBI-ProteinID:
XP_024239467
LinkDB
All DBs
Position
LG22:complement(80968..171996)
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AA seq
1322 aa
AA seq
DB search
MELSADEIRRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGATPQPFPPAASHALG
LNVQSVTSLMGASGVAYRSQSSEGVSSLSSSPSNSLETQSLSRSQSMDIDTASCEKSSIS
QVDVDSGIENMEVEDNDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDRDVI
FLPSLSAEFHQSRPKDVYPDFKDLIGQILMEVLMMSSMSHIHNPFASLTATSQPIAAAKS
ADRHLTLVQPSSQGGSPMATCASSFGASSLSSLYGCSPYPLAFNPARMTSPSLPTSPHPM
VAPSPPTMANPSRLSLSAPLPVSQRYRPYSVTSPCGLSTPPCPTLASLPGFSSVPGPVPA
CFPVPPITLSQAPAPRLPTTPQSVLLPSSRPRPPSSMPLPLLPTSPRAAARQAARIPSSL
GVSAGGIDSQSCSDCFSIEACMETEMLNYLIERFDSVGMEESKAPKICSHPSVSQLLRNI
RSQCISHAALVLQGALTQPRSPLQQSLLVPYMLCRNLPYGFIQELARMTHQEEVFRQIFV
PILQGLGLAVKECSFDSDNFKFPLMALAELCEIKFGKTHPMCNLMTSLPLWCPKSLGPGM
GREVQRLSFLGAFFSLSVFAEDDTKVGDKYFSGPAITMENTRVGSQTLQHYLESARGDLF
KILHNILLNGETREVALNYMAALVNRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKI
KLEMVDPYYIFHPLCRLQVSREETRLKATMEELKTWLAEIHDPSKLYDPKFPTECFFLTL
HTHHLSIIPGCRRYIRRLRAIRELNRTVEDLKSSERQWKDSPLASRHREMLKRCKTQLKK
LVRSKACADAGLLDENLLRRCLQFYSMVIQLILRMVDPAYPHITLPLNPEIPKSFAALPE
FYIEDVAEFLLFVVQYSPQVLYEPCVQNIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTN
PAVQPRTQRFSEMMENHQLSVKHLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKS
LWQNMGHHGTFLEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWD
QLPREQQQSRQSQLTQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLN
FNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSREL
FEEVISKMKKAGIKSTITIEKFKLLSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMT
DPVILPSGNIMDRAIILRHLLNSPTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGR
FL
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagtgccgacgagatccgcaggaggagactggcaagactggcaggaggacaa
acatcccagcccagcactcccctgacgtccccacagagagagaccccccctgggcccctt
cctgggacctcaggggccacaccccagccctttccaccagctgcctcacacgcactggga
ctcaatgtccagagtgtcacctctcttatgggcgcctcaggtgtggcgtaccgcagtcag
agcagcgagggtgtgagctccctctccagctctccctccaacagcctggagacccagagt
ctgtccagatctcagagcatggacatcgacactgcctcctgtgaaaagagcagcatatcc
caagtggatgtggactcagggatagagaacatggaggtggaggacaatgaccgcagggag
aggaggaacctggctgaaaaggaatccgctgaaacctccgatgtctctgaagagcaggct
ctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaggacagagatgtcatc
tttctcccctcgctttccgcagagttccaccagagcagacccaaagacgtctaccctgac
tttaaagacctgattggccagatcctgatggaggtgctcatgatgtccagcatgtcacac
atccacaatcccttcgccagcctgactgccacgtcccagcctattgccgctgccaaatct
gccgaccgccacctgacgctggttcagccctctagccagggcggcagtcccatggccacc
tgtgcaagctcatttggggccagctctctgtccagcctatacgggtgtagtccataccca
ctggcttttaacccagccaggatgacctctccatctctacccacctccccacatccaatg
gtagccccaagtccccctaccatggccaacccctctaggctctctctctccgcccccctg
cccgtctcccagcgctaccggccatactctgtcacctctccctgcgggctctccacccct
ccttgccccactctggccagcctccctgggttttcctccgtccctggacctgtccctgca
tgtttcccagtaccgcccatcaccctgtcccaggccccagccccaagactaccaaccacc
ccccagtcggttctccttccctcctccagacctcgcccacccagctccatgcccctccct
ctgctgcccacctcgcccagagcagctgcccgacaagctgcccggatcccgtctagtctg
ggtgtgtctgcagggggaattgactcgcaatcctgcagcgactgcttctccatcgaggcg
tgcatggagactgagatgctcaactacctcatcgagcgcttcgacagtgttggcatggag
gaaagtaaggcgcccaagatttgcagccaccccagtgtcagtcagctcctccgcaacata
cgctcacagtgcatttcccacgccgctcttgtccttcagggtgccctcacgcagcccagg
agccccctgcagcagtccctgctggtgccctacatgctgtgccgaaacctgccgtatggc
tttatccaggagctggcccgcatgacccaccaggaggaggtcttcagacagatcttcgtt
ccaatccttcaagggctgggtctggctgtgaaagaatgttccttcgacagtgacaacttt
aaattccccctcatggctttagctgagctctgtgagataaagtttgggaagactcacccc
atgtgcaatttgatgacatctctgcccctgtggtgtcccaagtccctgggcccggggatg
ggccgagaggttcagagactgtccttcctgggagcattcttcagcctgtcggtctttgca
gaggatgacaccaaagtgggtgacaagtacttctcgggcccagccatcactatggagaac
actcgtgtgggtagccaaaccctgcagcactacctggagtcagcccggggtgacttgttt
aaaattctccacaacatcctactaaatggagagacaagagaggtagcgctcaactacatg
gcagctctggtcaaccgcaatgtaaagaaagcccagatgcagacagacgacaagctggtg
tccacagacggcttcatgattaacttcctgtcggtgctgcaacagctgagcatgaagatc
aagctggagatggtagacccgtactacattttccaccccctctgccgcctgcaggtcagc
cgtgaggagacccggctcaaggccaccatggaagagctcaagacctggctggccgagata
catgacccctccaagttgtatgatcccaagttccccacagagtgtttctttctgacgttg
cacacccaccacctgtccatcataccaggctgccgacgctacatccgcaggctgagagcc
attcgcgagctcaacaggacggtggaagacctgaagagtagtgagcgccagtggaaggac
tctccgctggccagccgacaccgagagatgctaaagagatgcaaaacccagctcaagaaa
ctggtgcgctccaaagcctgtgccgatgcgggtcttctggacgagaacctgttacgcaga
tgtctgcagttttacagtatggtcattcagctcatcctacgcatggtggatcctgcctac
ccacacataactctaccactgaatcccgagatccccaaaagctttgctgctctgccagag
ttttacattgaagatgtggccgagttcctgctttttgttgtgcagtattcccctcaggtc
ctgtatgagccctgcgtccagaacattgtcaccttcctggtggtgttcatctgcagtcag
aactacatccggaacccctacctgatcgccaagctggtggaggttctgtttgtcaccaac
ccagctgtgcagccgcgcacccagcgcttctctgagatgatggagaaccaccaactgtcc
gtcaaacatttggtcccagccctcatgaagttctacactgacgtggagcacaccggtgcc
acaagcgagttctatgacaagttcaccatccgctaccacatcagcaccatcttcaagagc
ctctggcagaacatgggccaccatggcactttcctggaagagttcaactccgggaaacag
tttgtgcgttacatcaacatgctgatcaacgacaccaccttcctgctggacgagagcctg
gagtccctgaagcgcatccatgaggtccaggaggagatgaagaacaaggagcagtgggat
cagcttcccagggagcagcagcagagccgccagtcccagctgacccaggatgagcgggtg
tcacgctcctacctggccttggctacagagacggtcgacatgttccacatcctcaccaag
caggttcagaagcccttcctccggcccgagttggggcctcgtctggcggccatgctgaac
tttaacctccagcagctatgcgggcccaagtgccgggacctgaaggtggagaacccagag
aagtacggttttgagcccaagaagctcctagaccagcttactgacatttacctgcaactt
gactgtgcccgcttcgccaaggccatcgccgacgaccagcgctcatacagccgagagctc
tttgaggaagtgatttccaagatgaagaaagccggcatcaagtccaccatcaccattgaa
aaattcaagctgctatcggagaaggtggaggagatagtcgccaggaactcgcagtccgaa
atggactacagtgacgcacctgacgagtttaaagaccctctgatggacacattaatgact
gaccctgtgatactgccctctgggaacatcatggaccgagccatcatcctccgccacctt
ctcaactcccccactgacccctttaacagacagcctctcaacgaaagcatgctggagtcg
ctccctgaactgaaggagaggatccaggcatggatgagagagaagcaaggccagggacgt
tttctctag
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