Oncorhynchus tshawytscha (Chinook salmon): 112222993
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Entry
112222993 CDS
T05605
Name
(RefSeq) PHD finger protein 1 isoform X1
KO
K11467
PHD finger protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112222993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112222993
03036 Chromosome and associated proteins [BR:
otw03036
]
112222993
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
112222993
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
112222993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_2
PHD
PHD_ash2p_like
PHD_2
ASH2L-like_WH
DUF4537
Motif
Other DBs
NCBI-GeneID:
112222993
NCBI-ProteinID:
XP_024241656
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Position
LG23:11136902..11153033
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AA seq
493 aa
AA seq
DB search
MGGVSEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVLRKDIHSFSVGVEE
VCCVCDAPPLKEPLINCLKCRHGYHPECHTPSIEPEADSNSWICRQCVFAVATKRGGAIK
RGRFARLMQIMKLRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGEWNLKMLQCGSCGQWFH
EACTQCLTKPLLYGDRFYEFQCSACANGPETIQRLPMSWVDLAHLVLYHLSLCCKRKYFD
FDHEIMSFANENWDSLLLGSLSDTPRQDRCHNLLNALNSNKDRFVSGKEIKKKKCLFGLQ
VRAPPPLTSDSSPLITDPPINITQRRRSDPLSLPCQRRAVGPESRKSKRRIMETQPCPPP
VPATPIDLVPCCHGYVGGTNLYNSRKEEELNLGSPPKRMFALYHPTYNGAPAISRTLHHY
SAEDPCRVPPPCLPFSLSSSHHHHHNNQHHHQHQPGQKLDPCPSLMLRDVPSYPGGVGAG
GWVSCQGLGAGTG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggggggagtaagtgaaggggatgatgtgttagctcgatggagtgatggactactgtac
ctcggcaatgtgaaaagagtagatggagtcaagcaatgttgtctggtgagatttgaggac
aactcggaattctgggtcctaagaaaagacattcactctttctcagttggagtggaagaa
gtttgctgtgtctgtgatgccccgcctcttaaagaacctctcatcaattgtcttaaatgt
cgtcacggttatcatccggagtgccacactccgtccattgagccagaagctgacagcaat
tcttggatatgtcggcaatgtgtctttgcagtggcaaccaagagagggggagccatcaaa
cgaggacggtttgcccggctcatgcaaatcatgaaacttcggctgccctatcagctatca
tctttagactgggacccacagcatctgaccaaccagcagcagtgttactgctactgtgcc
ggacctggagagtggaacctgaaaatgttgcagtgtggaagttgtggtcagtggtttcat
gaagcttgcacacagtgtctgaccaagccgttgttatacggagacaggttttatgagttc
cagtgctcagcctgtgcaaacggaccagagacaattcaacggctacccatgagctgggta
gatttggcccatttggtgctctaccatctctccttgtgctgcaagagaaaatactttgat
ttcgaccatgaaatcatgtcgtttgccaatgagaattgggactctttgcttctcggctcg
ctctctgacacaccaaggcaagatcgctgccacaatctgctcaacgctttgaactccaac
aaagacaggtttgtctctggtaaagagatcaagaagaagaagtgtctttttgggctccag
gtccgagctccgcctcccctgacctctgattcgtcccccctcatcactgacccgcccatc
aacatcacccaaaggagaaggtcagacccattgtcactgccctgccagaggagagcggtg
gggccagagtcacgcaaatcaaagcggcgcatcatggagacacagccttgtccgcccccg
gtcccagccaccccaatagatctggtgccatgttgccatggctacgtaggtggaactaac
ctctacaactccaggaaggaggaggagctgaatttgggctctccacctaagaggatgttt
gccctgtatcaccccacctataacggagccccagccatctctagaaccctgcatcactat
agtgcggaagacccttgtcgagtgccgcccccctgcctccccttctccctgtcatcctcc
caccatcaccaccacaacaaccagcaccaccaccagcaccagcctggacaaaagttggat
ccgtgcccctccctcatgctgcgtgatgtcccttcctatccgggcggcgtgggggcgggg
ggatgggtcagctgccaggggctgggggcggggacggggtga
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