Oncorhynchus tshawytscha (Chinook salmon): 112225197
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Entry
112225197 CDS
T05605
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112225197 (scn1laa)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
112225197 (scn1laa)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
PFF1_TM
FraC
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
112225197
NCBI-ProteinID:
XP_042162342
LinkDB
All DBs
Position
LG26:13611918..13654860
Genome browser
AA seq
1991 aa
AA seq
DB search
MAQLLVPPGPDSFRLFCRESLDAIERRIAEENAKKPKGKPNDDGDNGPKPSSDLEAGKSL
PLIYGDIPKGLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYVLSPFNPLRRIS
IKVLVHSLFSMVIMFTILTNCAFMTLSQPPDWAKNIEYTFTGIYTFESLIKILARGFCVG
KFTFLRDPWNWLDFCVIVMAYVTSFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALI
QSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRNKCLRIRPNSTNLLNDTLDFNGKEYND
GDFNETVPFNWTNYTNNPDNYYYLPGKRDALLCGNGSGAGLCPEGFWCVKAGRNPDFGYT
SFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVA
MAYDEQNQATMEEAQKKEEEFQAMLEQLRRQQEDAQAAATVMAAESGEFSERGDLTESSS
EASKLSSKSAKERRNRRKKRKQREEEEREDNDKCHRSESESSMKKSHFRFSMDASNLHNY
DMNCSTPYQSFLSIRGPLFSSRRNSRASLYSFRDRARDIGSENDFADDENSTFEDNDSCR
GSLFVPRQSNRRSSNVSQTSMPSHVVLPANGKMHSSVDCNGVVSLVGGVSLPKSPEGLLL
PEENSTETEYRKARYGSYQASMDFLEDPVARQRALSVASVITNTMEELEESRQKCPPCWY
KFANTFLIWDCCPKWLRIKKIVKMIVMDPFVDLAITICIVMNTVFMAMEHYQMSGEFNTM
LYVGNLVFTGIFTAEMCFKIIALDPYIYFQEGWNIFDGVIVSLSLMELGLANVSGMSVLR
SFRLLRVFKLAKSWPTLNKLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYRDC
VCKISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFLMVMVIG
NLVVLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIDRIHQGVAFVKALVRRSFQSICL
RKKKRSLNEDTTLDDLHKTMGTNWNSNHTTVEIMKDPDYIKDGNGATSGLGVGVCSNAAG
KYIMNDNTDYMPFIHNASLTVTVPIAVGESDLNTEDFSSDSSDIEESKEQLSEDHPLSSS
EGSTVDIRPPGEGEGSVGMEPEESMEPEGCFTDGCVRRFQCCQVNVDEAKWKMWWTLRKT
CFRIVEHNWFESFIIFMILLSSGALAFEDIYIEKRKTIKTVLEFADKVFTHIFILEMLLK
WVAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYAELSAIKSLRTLRALRPLRALSRF
EGMRVVVNALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNITTQERFKVRDV
ANKTECLALEGAYWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEDQPDYE
VNLYMYMYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKL
GSKKPQKPIPRPANKFQGYVFDFITKQAFDIVIMILICLNMVTMMVETDDQTDDMDGILY
KINLVFIVMFTGECILKMFSLRQYYFTIGWNVFDFIVVILSIIGMFLSELIEKYFVSPTL
FRVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAY
VRKESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNKREPDCDSRKEHPGSKYKG
GDCGNPPVAIIFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWE
KFDARATQFMEYEKLSDFADALDPPLRISKPNKIQLIYMDLPMVSGERIHCLDILFAFTK
RVLGEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKQEDMSALIIQRAFRRYLLRR
IVKRASAMYKEKMLLDKEVLVIDKFNEISTSDRTDMTYSTGSPPSYDSVTKPEKNKYEKV
KREKEVKKKKK
NT seq
5976 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtacctccaggaccagacagcttccggctgttttgtcgtgagtcc
cttgatgccatcgagaggcggatcgctgaggagaacgccaagaaacccaaggggaagccc
aatgacgatggcgacaacggacccaagcccagcagtgacctggaggcaggcaaatcactg
ccactcatatacggggacattcccaaaggattggtgtccacaccactggaggacctggac
accttctacagcaaccagaaaacctttatagtattgaaccgagggaaggccatcttccgc
ttcaacgccactcctgccttgtatgtcttaagccccttcaaccctcttagaagaatatca
attaaggttttggttcactcattgttcagcatggtaatcatgttcaccatccttaccaac
tgtgcgtttatgaccctgagtcagcccccggactgggcaaagaatatagagtacacattc
actggaatttatacatttgagtctcttataaaaatattggcaaggggcttctgtgtcggg
aagttcacctttctacgagatccatggaactggttggatttctgtgtcattgtcatggca
tatgtcacatcgtttgtggacctgggcaacgtgtcagcactgagaacgttcagggttctc
cgagcactgaaaacgatatcggtcatcccaggcctcaagaccattgtgggagcgctgatc
cagtcagtgaagaaactgtcagacgtgatgatcctcactgtattctgcctaagtgtcttt
gccctagtagggctgcagctgtttatgggcaatttaagaaacaaatgtttaaggatccgt
cctaactcaaccaacctcttgaatgatacattggactttaatgggaaggagtataatgat
ggggactttaacgagaccgtcccgttcaactggaccaattacactaataatcctgataat
tattactacctcccaggtaaaagggatgctttgctttgtggaaatggaagtggtgctggg
ctgtgtccagagggattctggtgcgtcaaagcgggccggaacccagacttcggctacacc
agctttgacacgttcagctgggccttcctgtctctgttcagactgatgactcaggactac
tgggagaacctctaccagcagaccctgcgggctgctgggaagccgtatatgatcttcttt
gtgctggtcatcttcctgggctccttctacctgatcaacctgatcctggctgtggttgcc
atggcgtacgacgagcagaaccaggccaccatggaggaggctcagaagaaggaggaggag
ttccaggccatgctggagcagctgagaagacagcaggaggatgcacaggcagcggcaaca
gtgatggcggctgagagtggggagttcagtgagagaggggacctcactgagtcctcctca
gaggcctccaaactcagctccaagagcgccaaggagaggcgcaataggcgcaagaagagg
aagcagagggaggaggaggagagagaggacaatgacaagtgtcacaggtctgagtccgaa
agcagtatgaaaaagagtcacttccgcttctccatggatgcctctaacctgcacaactat
gacatgaactgttcaacaccataccagtccttcctgagtatccgcggacccctgttctcg
tccagacggaacagccgggctagcctctacagcttccgggaccgtgcgcgggacataggc
tcagagaacgactttgccgacgatgagaacagcactttcgaggacaacgacagttgccgg
ggctctctgtttgtccctcggcagagcaaccggcgctccagcaacgtgagccagaccagc
atgccatcacacgtcgtgctgccagcaaatgggaagatgcacagctccgtcgactgcaac
ggggtggtgtccctagtgggcggggtttcactccccaagtcacctgagggactccttctg
ccagaggaaaactctacggagacagagtatagaaaggcccgatatggatcgtaccaggcc
tctatggacttcctggaagacccagttgccaggcagagggcgctcagtgtagctagtgtt
ataaccaacactatggaagaacttgaagaatcgagacagaagtgccctccttgctggtac
aagtttgccaacaccttcctcatctgggactgttgtccgaagtggctgaggatcaagaaa
atagtcaagatgatcgtgatggacccgtttgtagacctagctatcaccatatgtattgtt
atgaacacagtgttcatggctatggagcattaccaaatgtctggggagttcaacaccatg
ctttatgtgggaaacctggtgttcacgggtatcttcacagctgagatgtgtttcaagatt
attgctttggatccatacatttattttcaggaaggctggaatatttttgatggtgtcatt
gtcagtttgagcttgatggagcttggcttggccaacgtgtctggaatgtctgtcctcaga
tcattccgattgctgagagtattcaaactggccaagtcttggcccacactgaacaagctg
atcaagatcattggtaactcagtgggggccttgggtaatctcaccctcgtactggccatc
attgtcttcatcttcgccgtggtgggcatgcagctttttgggaagagctacagagactgt
gtgtgtaagatctctacagactgcacactgccccggtggcacatgcatgacttcttccac
tccttcctgattgtgttccgggtgctgtgtggggagtggatcgagaccatgtgggactgt
atggaggtggctggtcagagcatgtgtctcatcgtcttcctgatggtcatggtcatcggg
aacctagtggtcctgaatctgttcctggccttgctgctgagctcgttcagtgctgataac
ctggcggccacggatgatgacagcgagatgaacaatctgacggtggccatagaccgcatc
caccagggcgtcgccttcgtcaaggccttggtgcgccgctctttccaaagcatctgtctg
aggaagaagaagaggagcctgaacgaggacacgaccctggatgacctccacaaaaccatg
gggaccaactggaactccaaccacaccactgtggagatcatgaaagaccctgattacata
aaggatggcaatggcgccaccagtgggttgggagtgggggtgtgcagcaatgcagcaggg
aagtacataatgaatgacaacactgactatatgccgttcatccacaacgccagcctgacc
gtcacagtgcccatcgctgtgggagagtcggacctcaacactgaggacttcagcagcgat
tcctcggacatagaggaaagcaaagagcagctatctgaagaccatccgctgagctcctca
gagggcagtacagtggacattaggcccccaggagagggagagggctcggtgggcatggag
cctgaggagtccatggaacctgaaggctgcttcactgatggatgtgtccgcagattccaa
tgctgccaagtgaacgttgatgaggccaagtggaagatgtggtggacgttgagaaaaact
tgtttcaggatagtggagcacaactggtttgagagctttatcatcttcatgatcctgctc
agcagtggagcgctggcatttgaggacatctacatcgagaagaggaagaccattaagacg
gtgttggagtttgcagacaaagtcttcacccacatcttcatcctggagatgttgctgaag
tgggtggcctatggattcgccaaatacttcaccaacgcttggtgctggctggacttcctc
attgtcgacgtgtctcttgtcagccttgtggccaatgccctgggctacgctgagctgagt
gccatcaagtccctgaggactctacgagcactgaggcccctgagagcgctgtcccgcttc
gagggcatgagggtggtggtcaacgctctgctcggagccatcccctccatcttcaatgtg
ctgctggtctgcctcatcttctggctcatcttcagcatcatgggcgttaacctgtttgca
gggaaatactaccattgtgtcaacatcaccacacaggagcgcttcaaagttagagacgta
gctaacaagacagaatgtttggctttggaaggtgcctactggaagaatgtcaagatcaac
tttgataacgtgggagcgggctatctggcactgttacaagtggctacattcaaaggctgg
atggacatcatgtatgcagctgtggactctcgcaatttggaagatcaacccgactatgaa
gttaatctgtacatgtatatgtactttgtggtattcatcatatttggatccttctttaca
ctcaacctcttcattggtgtcattatagacaacttcaatcagcaaaagaaaaagtttgga
ggtcaagacatcttcatgacagaggaacagaagaaatactacaatgctatgaagaagctt
ggctcaaagaaaccccaaaagcctatcccaaggccagcgaacaagtttcaaggatatgtc
tttgatttcattacaaagcaagccttcgacattgtcatcatgattctcatatgccttaat
atggtcaccatgatggtggagacggacgaccagacggacgacatggatggaattctctat
aagatcaacctggtgtttattgtcatgtttaccggagagtgtattctgaagatgttctca
ctccgccaatactacttcaccattgggtggaatgtatttgactttattgttgttatcctg
tcgataattggtatgtttctgtctgaactgatagagaagtactttgtttcaccaacctta
ttccgagtcattcgactggcccggattggtcgcatccttcgcctcatcaagagtgccaag
ggaatccgtacactcttgtttgctttgatgatgtcacttcctgccttgttcaatattggt
ctcctgctcttcttagtgatgtttatctatgccatctttggcatgtcaaactttgcatac
gtcaggaaggagtctgggattgatgacatgttcaactttgagacatttggcaacagcatg
atttgcctgttccagatcaccacgtcagctggctgggacggcctgctggcacccatccta
aacaagagagagccagactgtgacagccgtaaagagcacccaggcagcaagtacaagggg
ggagactgtgggaatccccctgtagccattatcttctttgtgagctacatcataatctgt
tttctcattgtggtcaacatgtacattgctgtcatcctggagaacttcagtgtggccact
gaggagagcgctgagcccctgagcgaggatgactttgagatgttctacgaggtctgggag
aagtttgatgcaagggccacccagttcatggagtatgagaagctgtctgacttcgctgat
gccttggaccccccgctacgcatttctaagcccaacaagatccagttgatctacatggat
ttgcccatggtgagtggggagcgcatccactgcctggacatcctgtttgccttcaccaag
cgcgtcctgggtgagggcgaaggcttggacatcctccgcggtcaaatggaggagcgcttt
atggcctccaacccctccaaggtgtcctacgaacccatcaccaccacgctacgccgtaaa
caagaagacatgtctgccctgataattcagagagctttcagacgatatctgctcagacgt
attgttaaacgggcctctgccatgtacaaagagaagatgctccttgataaagaagttctc
gtcatagacaaatttaacgagatctctacttcagacagaactgacatgacatactccaca
ggctcgcccccatcatatgacagtgtcacaaaaccagagaaaaacaaatatgaaaaagtc
aagagagagaaggaggtaaagaagaaaaagaagtga
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