Oncorhynchus tshawytscha (Chinook salmon): 112229349
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Entry
112229349 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: POU domain, class 2, transcription factor 2
KO
K09364
POU domain transcription factor, class 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112229349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112229349
03021 Transcription machinery [BR:
otw03021
]
112229349
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112229349
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
112229349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
HTH_31
Motif
Other DBs
NCBI-GeneID:
112229349
NCBI-ProteinID:
XP_042166535
LinkDB
All DBs
Position
LG31:complement(7918784..7969010)
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AA seq
575 aa
AA seq
DB search
MFVPLPVPFVFQRTASDFSAWRLKSPLALRSSSDIRMSKPAEDEKPGTDFPGESTDSERN
SPDANDQVQPMKTSPFSLSPSLSNTKSKSEAGPEMTSTHVPPPSQQQTPHPHTQLMLAGS
QLAGLAALLPAQQQLLLQQAQAQLLAAAVQQSNAAHAAHAAHAAAQANQQQQQQQQQQQL
TKQEHAQPQLTLSQPIQLTAQDIQQLLQLQQLVLMPGHHLQSPQFLLPQAQGQQGQQGLL
STPNLISLPQHQQSQGSLLTTPPRLGLQAQVXYYXKPPRMSAPMTSVTSGPHGEEPSDLE
ELEQFARTFKQRRIKLGFTQGDVGMAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLL
EKWLNDAETMAIDNMLPSPSSLSSPMMGFEGMTGRRRKKRTSIETNVRVALERNFISNQK
PNSEEILLMGKQLNMEKEVIRVWFCNRRQKEKRINPCSATPPLPSQSSLVTHKPPCYNPH
MMSSQGLHQAATSLSTTVTSPSPSATCPLTPSGSATMSSAPSSVTPPPHSTASNAPPTLS
AHSLNAGNTMMGVSTGMNQALISSNPLATMQGVLV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcccttgccggtgccgttcgtctttcagagaactgcttccgacttcagcgcc
tggcgtctcaagtccccgctggctctacgctccagctccgatatcaggatgtcaaaacca
gcagaggatgagaagcctgggacagactttccaggggagagcacagactcagagaggaac
agtcccgatgcaaatgatcaggttcagccaatgaaaacgagtcccttcagtctttctcct
tccttgagcaacaccaagagtaaaagtgaggctggccctgagatgacctccacccatgtg
ccgcctccctcccagcagcagacacctcaccctcacacacaactcatgttggcagggagt
cagctggcagggctggctgccctcttgcctgcgcagcagcagctgttgcttcagcaggcc
caggctcaactcctggccgctgccgtgcagcagtccaacgcggctcacgctgctcatgcc
gcccacgcagcagcccaagccaatcagcagcagcagcagcaacaacagcagcagcagctg
accaaacaagagcatgcccagcctcagctcacgctctctcagcctatccagctcaccgcc
caggatatccagcagctgttgcagctgcagcagttagtcctgatgcccggccatcacctg
cagtctcctcagttcctcctgcctcaggcccagggacaacaggggcagcagggtttgctc
tcgacaccaaatttaatttcgctacctcagcatcagcaaagccaggggagtcttctaact
actccacccaggctgggactgcaagcacaggtatagtattattgaaaaccacctcgaatg
tccgcccccatgacctcggtgacctctggcccgcacggcgaggagccaagtgacctggag
gagctggagcagttcgcccgcaccttcaaacagagacgcatcaaactgggcttcacacag
ggtgacgttggcatggcaatggggaaactgtatgggaatgacttcagccagaccaccatc
tctcgcttcgaggccctcaacctgagctttaagaacatgtgcaagctcaagcctctgctt
gagaagtggctaaacgatgcagagaccatggcgatagacaacatgcttcccagccccagc
tctctctcctcccccatgatggggtttgagggcatgacggggcgccgcaggaagaaacgc
accagcattgagaccaacgtccgcgtggccttagagcgcaacttcatctcgaaccagaag
cctaactcagaggagatcctcctgatgggaaagcagctcaacatggagaaggaggtgatc
cgggtctggttctgcaaccggcgccagaaagagaaacgcatcaacccctgcagtgccacc
cctcccctgcccagccagtcctcccttgtgacgcacaaacccccctgctacaacccacac
atgatgtctagtcaggggctgcaccaggctgccaccagcctcagcacaaccgtgaccagc
ccatcgccctcggcaacctgccctctgacacccagtggctctgcaactatgagctccgcc
ccctcctctgtgactccgcctccacacagcacagccagcaacgcccctcccaccctcagt
gcccacagcctgaacgctgggaacacaatgatgggagtaagcacagggatgaaccaggct
ctcatcagcagcaatcccctggccacaatgcaaggtgtgttagtctga
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