Oncorhynchus tshawytscha (Chinook salmon): 112230449
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Entry
112230449 CDS
T05605
Symbol
traf5
Name
(RefSeq) TNF receptor-associated factor 5 isoform X1
KO
K09849
TNF receptor-associated factor 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04217
Necroptosis
otw04621
NOD-like receptor signaling pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
112230449 (traf5)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112230449 (traf5)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112230449 (traf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112230449 (traf5)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
112230449 (traf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
zf-TRAF_2
zf-C3HC4
TRAF3_RING
zf-C3HC4_2
ATG16
zf-C3HC4_4
EzrA
zf-RING_2
zf-RING_UBOX
NPV_P10
HrpB7
DUF948
Spt20_SEP
CorA
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
112230449
NCBI-ProteinID:
XP_024252539
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Position
LG32:complement(4427671..4438669)
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AA seq
599 aa
AA seq
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MNVDVNYKSKPRTSSHIPFLKTRLQIAMATKESDPSGSGGLSRQNSGVAGPWESDLTAVQ
HSLKFVKKLEEHYVCPTCKGVVLNPHQTGCGHIFCYRCIQGLLENSPATTPACPLDRGLI
KSDEVFQDNCCKREISNLEVYCTNSPNCSHRMTLCRLQEHLQACQFESLQCSNAGCSETM
QRKDLQEHLRISCAYRMEPCHYCKHPYTCCQLEDHERHSCPEVEIKCPNKCSQMIKRCML
EDHADQCPEVQTDCVFKKYGCFVRERRAQVQVHEETALNDHILLVLGSNTKLETQMAILQ
QEVLLRHKELQERSRQVSGLEKEVHPLAQQVSRCDNTLSAVQRSLEEQRDHISSVQLQLE
ELSSVFGPGVAREELGQIRASLDALRQQVSVTEGLKDHLGELKETYMRHSRLLSIHTAQL
ECNEEHFRELESTSYDGKLIWKLRDYRKRKEAGSQGQGPCLSSAPFHTGRSGYKMAARAY
LNGDGAGRDTHLSLYVVLMRGDFDPLLPWPFRQPVSLSVLDQSGTNNHLTMSFKPDPENT
SFHRPGSAAATANAPTNVASGFQCFASHAQLETPKNAIYVRDDTLFVKVKVDTSGLEDL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtggatgtaaattacaaaagtaaaccaagaacatcgtcgcacattccgttttta
aagacacgcctacagattgccatggcaacaaaggagagtgacccgagtggatccggagga
ctctccaggcagaattcgggagtggcgggaccgtgggaatcggacttgactgcagtgcag
cacagtttgaagtttgtgaagaagctggaagagcactatgtttgtcccacctgtaaagga
gtagttctcaacccacaccaaaccggctgtggacacatcttctgctaccgctgcatccaa
gggctcctggaaaactccccagccaccacccctgcctgtcctttggacagaggtttgatc
aaatctgatgaggttttccaagacaattgctgcaaaagggagatctcaaatttagaagtt
tactgcacaaactcccccaactgctcccacagaatgacattatgtcggttgcaggagcat
ctacaggcatgtcagtttgagtcattgcagtgctccaatgcaggctgcagtgagaccatg
caacgtaaggacctgcaggagcacctcagaatcagctgcgcctaccgtatggagccctgt
cactactgcaagcatccttacacatgctgccagctcgaggatcatgagaggcattcatgc
ccagaggttgaaatcaagtgccccaacaaatgctcccagatgattaaaagatgcatgctt
gaagaccatgctgaccagtgtcctgaggtgcagacggactgtgtttttaagaaatatggc
tgctttgtccgggagaggagagcccaagttcaagttcatgaggaaactgctctcaatgat
catatcctcctggttctggggagcaacaccaagctggagacacagatggcaatcctccag
caggaggtgctgctgaggcacaaggagctccaggagaggagccgccaggtcagcggtctg
gagaaggaggtccacccactggcccagcaggtcagccgatgtgacaacaccctgtctgca
gtacagaggtctctggaggagcagcgggatcacatctccagcgtccagctccagctcgag
gagctgtccagtgtgtttggccctggtgtggcccgggaggaactgggccaaatcagagcg
tccctggacgccctcagacagcaggtgtccgtcacggaggggctcaaagaccacctgggg
gagttgaaggagacctacatgcgccactcgcgcctcctcagcatccatacggcgcagctg
gagtgcaacgaggagcacttcagagagctcgagtccacctcgtacgacggcaagctcatc
tggaagctccgcgactaccgcaagagaaaggaggctgggtctcaaggccagggaccgtgc
ctgagcagcgcgcccttccacacgggtcgcagtggctacaaaatggccgccagggcctac
ctgaacggcgacggggccggccgggacacccacctgtctctctacgtggtcctcatgagg
ggagacttcgaccctctcctgccctggcccttcagacagcctgtgtcattgtcagtgctg
gaccagagcggcaccaacaaccacctgactatgagtttcaaacccgacccagaaaacact
agcttccaccggcctggctcggccgctgcaaccgccaacgcccccaccaacgtggcctct
ggtttccagtgctttgcctcgcatgcccagctggagacacccaagaacgccatatacgtg
agagacgatacgctctttgttaaggtcaaagtagacacgagcggtttggaggacttgtag
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integrated database retrieval system
