Oncorhynchus tshawytscha (Chinook salmon): 112232763
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Entry
112232763 CDS
T05605
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112232763
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112232763
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112232763
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112232763
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
AAA_23
AAA_15
MukB
Motif
Other DBs
NCBI-GeneID:
112232763
NCBI-ProteinID:
XP_024255755
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All DBs
Position
LG15:complement(22028047..22251513)
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AA seq
1918 aa
AA seq
DB search
MSCSIPLSPDIVLLGAFCKILIDTIEGTPGLHVFWSMFRPLIQGKVLYTPDTPATRLMVK
EANSTFNALAMIKELADAWEDFGHLVWDYFQNGRQVNTLRALLDNPVFVALLNQRLKGTR
WTAELLANFLYNGPPEGRPTGMPPNDWRNAFNTTSQILDLLKKFIGCLNLDKFEAADSER
HLMTRALELLESNRYWAGIVFEDLNPAASHPPPYVKYKIRMDIDKGERTNKIKERGWSPG
ARSNSFNDLRYIWGGFAYLQDMMDHGIIRAHTNKSQPLGVFAQQMPYPCYVDDVFLRSLA
RSLPLYMTLAWIYSVAMIVKGIVMEKEARLKETVRMMGLRSSTYWLSWAVSSMLPLAVSA
LLLTLILKYGKVLQYSDPSVIFVFMLVFCVATIMECFFISVFFSKANLAAACGGLIYFVL
YLPHLLCYAWRDVLGFQVKIAVSLLSCVAFGYGCENFAKYEEQGIGIQWSNIAQNPEGDR
YSFIVSIIMMLIDALIYWLLTWYIENVFPGQYGIAKPWSFPFMASYWCGMSAVPNADPSQ
FKDPMEYNDYLEKPLPNMKAGVSIRNLVKIYKTGKKLAVDGLSVDFYENHITSFLGHNGA
GKTTTMSILTGLFAPTSGTALINGYDIRTDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFY
ARLKGRSRDEVKTEMDQMIKDVGLPHKRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDE
PTAGVDPYARRGIWELLLKYKKGRTIILSTHHMDEADILGDRIAIISHGKMCCYGSSLFL
KKYFGSGYYLTLVKAGNEQITNERSGVKQGQEKEETDETLRRTSLDEGIASQNWSNSDPT
ELTAVSKLVRRHVPEAVFLESIGQEITYILPYSGAKDGTFALLFKELDLEMADIGFTNYG
ISDTTLEEIFLKVAEDTGVDVEIPDNKAPLGRDKTRSSRESKRQRHSQTNVGNTSDKVTG
KRAEVKAKFTSRVEDVERVANVNGKGSSVIMGWELIRRQFLALFIKRFHHARRSRKGIIA
QVILPAVFVCLSLIFSVIIPPFAEYPNLELQPWMYGLPQTTFYSNDGPPNNTEVAQVVDS
LVNNPGFGTRCMANNPIPNLPCVPIDSKWTTPSVETSINNILINGTWSMANPSPNCQCST
PQKTIMLPDCPPGAGGLPPPQRIQNTTDTLQDLTGRNMTDFLLKTYEKAGKKRYGGISVG
GVNSQVRMTEPEIEAVIRDLKSLFNSPQDNTTEQILLNAETLLKELGTRDNVKVWFYNQA
WHGIVSFLNVANNAILRGNLPTGRDPREYGISSSSHPLNLTKVQLSYQALAATSTDLVVS
ICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSGVNPAVYWVANFAWDICNYIVPCLIVI
IIFLCFQQKAYVSPPNLPALIWLLVMYGWSITPMMYPASFIFSVPSTAYVVLTCVNLFIG
INGSLATFVMELFDDDKISHINDIVKQVLLIFPHFCLGRGLIDMGKNQAMATLFERFGED
RFQDPLSWDMVGKNLCAMAIQGAVMFTITLLIQYKFCYKPRLISGKSFSKEDEDVDVARE
RARVHEGGAENDLLRICDLSKVYSGKNIPAVDRVCLGVPAAECFGLLGINGAGKTTTFKM
LTGDIAISGGEAFLNRYSVRTEMRDVHQNMGYCPQFDALNDLLTGREHLEFYARLRGVPE
NEVTMVAEWGIQKLGLVKYSNKAAGTYSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPK
ARRFLWDCILSVIKEERSVILTSHSMEECEALCTRMAIMVNGQFKCLGSIQHLKSRFGDG
YTVIVRVGGSPPALGPVEEFVHETFPGSILKEKHHNTLQYQLPLSKGALVSIFSQFTTHQ
QRLGVEDYSVSQTTLDQVFVNFARYQHEEDNHATYDNKVDVSSEMPMKTQNSPVPESA
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgctccattcctctctccccagacattgtgttattaggtgccttctgcaaaata
ttgattgatactattgagggaactcctggcctacatgttttctggagtatgtttcggccc
ctaatccaagggaaggtcctctacacccctgacacacctgccactcggctaatggtgaaa
gaggcaaatagcacattcaatgcattggccatgataaaagagctggcggacgcttgggag
gatttcggacatcttgtttgggactactttcaaaatggccgccaagtcaatacactgcgg
gccctgctggataaccctgtgtttgtagccttgctcaaccaacggctcaaaggcacaaga
tggacggcagaactgctcgccaacttcctgtacaatgggccccccgagggtcgccccacg
ggcatgccgccgaatgactggcgcaacgcgttcaacaccacaagccaaatcctggacctc
ctgaagaagttcattgggtgcttgaacctggataagtttgaggctgccgacagtgagaga
catctcatgactagagccttggagctactagagagcaataggtactgggctggtatcgtt
ttcgaagacctcaaccctgccgccagccacccccctccttacgtcaagtacaagatccgc
atggacattgataagggggagcgtacgaataagatcaaagaaaggggatggtctcctggg
gcccgtagcaactcctttaacgacctgcgctatatatggggaggcttcgcctatctgcag
gacatgatggaccatggcataatacgggcacacacaaacaaatcccagccgctcggcgtg
tttgcccagcaaatgccatatccctgctatgtggacgatgtgttcctccgctcgctggca
cgctctctgcccctgtacatgaccctggcctggatctactcggtggcaatgatcgtgaag
ggcatcgttatggagaaggaggcgcgtctgaaggagacagtgaggatgatggggctgaga
agctccacctactggctgagctgggccgtgtccagcatgctgccgctggctgtcagtgct
ctcctcctcaccctcatcctcaagtatgggaaggtgctgcagtacagcgacccctctgtg
atcttcgttttcatgctggtcttctgcgtggccaccatcatggagtgcttctttatcagc
gtgttcttctccaaggccaacctagcggcggcgtgcgggggcctcatctacttcgtcctc
taccttccgcacctcctctgctatgcctggagggacgtcttggggttccaggtcaaaatc
gctgtgagtttgctgtcgtgtgtggccttcgggtatggctgtgagaacttcgccaagtat
gaggagcagggcatcggtatccagtggagtaacattgcccaaaatcctgagggagatcgg
tacagtttcatcgtgtccatcatcatgatgctcatcgacgccctcatctactggctgctc
acatggtacatcgagaacgtcttcccaggccaatatggaatagccaagccgtggtccttc
cctttcatggcctcctattggtgcgggatgtctgcggtgcccaacgctgaccctagtcag
ttcaaggatcccatggaatacaatgattatttggaaaagccactacccaatatgaaggca
ggggtctcaatcaggaaccttgtgaagatctataaaacgggaaaaaagcttgctgtggat
ggacttagtgtggacttctacgagaatcacattacctctttccttggtcacaatggcgca
ggaaaaacaaccactatgtcgatcttgacgggactgttcgctccaacatcggggaccgct
ctcataaatggttacgatatccgcacggacatggacaccattaggaagcatctgggaatg
tgccctcagcacaacgtcttgttcaatgaccttacagtagaggagcacatctacttctat
gccagattaaagggtcgaagccgtgatgaagtgaaaacggagatggaccaaatgatcaag
gatgtagggctgccgcacaaacgcaaggaacttgccaagaacctgtcagggggaatgcaa
aggaaactgtcggtggccatcgcattcgtgggaggatccaacatcgtcatcctggatgaa
cccacagcaggggtggacccgtacgcccggagagggatatgggaacttctgttgaagtac
aaaaaaggtcgcacaatcatcctctccactcatcacatggatgaggccgacatcttggga
gaccgcattgccattatctctcacggcaagatgtgttgttacggctcctccctgttcctg
aaaaaatactttggcagtggctactacctcactctggtcaaggccggaaatgagcaaatt
accaacgagcgcagcggagtcaagcagggccaggagaaagaggagacggatgagaccttg
aggagaaccagtctggatgaagggattgcaagccagaactggagcaactctgaccccaca
gagcttacagctgtcagtaagctggtgcgtcggcatgttcccgaggcagtgttcctggag
agcatcggccaggagatcacctacatcctgccttacagcggggccaaggatggcaccttc
gccctccttttcaaagagctggacctggagatggctgacattggcttcaccaactacggc
atctcggataccacactagaggagattttcctcaaagtggcggaggacacaggtgtggat
gtggaaattccagataacaaagcacctttgggaagagacaagacaagaagttcaagggaa
tccaagcggcaacggcacagccagaccaatgtagggaacacttcagacaaagtgactggg
aaaagggctgaagtgaaagccaagttcacaagcagagtggaggatgtggagagagttgcc
aatgtgaatgggaagggctccagtgtgataatgggatgggaactaatccggagacaattc
ctggccctcttcatcaaacgtttccaccacgcacgcaggagccgcaaaggcatcattgct
caggtgattctgccagctgtcttcgtctgcctgtctctcatcttttccgtcatcattccc
ccttttgctgagtaccctaatctggagctgcagccatggatgtacgggctgccccaaacg
acattctacagcaatgatgggccgccaaataatacagaggttgctcaagtggtggactct
ttggtgaataatcctgggtttgggactcgctgcatggctaacaaccctataccgaatctc
ccgtgtgtccccattgattctaaatggaccactccctcagtggaaacctctatcaacaac
atcttaatcaacgggacctggagcatggccaacccttcccctaactgccagtgcagcact
cctcaaaagactatcatgctgccagattgcccacctggagccggggggctgcctccccct
cagaggatccagaatactacggacacactacaggacctgacagggaggaacatgacagac
ttcctcttgaagacgtatgagaaagcaggcaaaaaaaggtacggagggatttccgttgga
ggagttaactcccaagtcaggatgactgaaccggaaattgaagctgtaatcagggatttg
aaaagcctattcaattccccccaggataacacgactgagcagatccttctgaacgctgag
acgctcctgaaagagcttgggaccagggataatgtcaaggtgtggttctacaaccaagcg
tggcacgggatcgtttcgttcctcaacgtggccaacaacgccatcctgaggggcaacctg
cctacgggccgtgaccccagggagtacggcatctcctcctccagccaccctctcaacctc
accaaggtgcagctctcctaccaggcacttgctgccacctccaccgatttggtggtgtcc
atctgtgtcatcttcgccatgtcctttatcccagcgagctttgtcctcttcctcatccag
gagcgtgtcaacaaagccaagcacttgcagtttgtcagcggcgtcaacccggccgtctat
tgggtagccaacttcgcctgggatatatgtaactacattgtcccgtgtctaatagtcatc
atcatcttcctgtgcttccaacaaaaagcctatgtgtcccctcctaacctaccagctttg
atttggctacttgtaatgtatgggtggtctatcacacccatgatgtacccagcctcgttt
atcttcagtgtccccagcacggcctacgtggtgctgacctgcgtcaacctcttcatcggc
atcaatggcagcttggccacctttgtcatggagctgttcgatgatgataaaatctcgcac
atcaatgacattgtgaagcaggtgctgctgattttcccgcacttctgtctgggtcgaggg
ctcatcgacatgggcaagaaccaggccatggccactttatttgaacgcttcggggaagac
cgtttccaggaccccctcagctgggacatggtggggaagaacctgtgtgccatggccatc
caaggggcagtcatgttcaccatcactctccttatccagtataaattctgctacaaaccc
agactgatttctggaaagtcattctccaaggaggacgaagatgtggatgtcgctcgggaa
cgtgcacgcgtccatgaaggcggtgccgagaatgacctgttgagaatctgcgatctctct
aaggtgtactcagggaagaacattcctgctgtggacagggtgtgtttgggtgttccagcc
gcagagtgttttggactgctagggattaacggggcaggaaaaacaaccaccttcaagatg
ctgacgggggacatcgccatctccggaggagaggccttcctaaacagatacagcgtacgg
acagagatgagggacgttcaccagaacatgggctactgcccgcagtttgacgccctcaac
gaccttctcaccggacgagagcatctggagttctacgccagactacgaggcgtaccggag
aatgaagtcaccatggtggcagagtggggcatccagaagcttggcctggtcaaatattcc
aacaaggcagccggtacctacagcggagggaacaaacgcaagctctcaactgccatggct
ctgattggttgtcctcctgtggtattcctggacgagccaacgacagggatggaccccaaa
gccagacgcttcctgtgggactgtatcctgagtgtcatcaaagaggaacgctcggtcatc
ctaacatcacacagcatggaggagtgtgaggccctgtgcacacgcatggccatcatggtg
aatggacagttcaagtgtctgggcagcatccagcatctcaagagcaggttcggggacggc
tacactgtgatcgtgagggtgggcggctcgccccccgctctgggccccgtggaggagttt
gtccacgagacctttccgggtagcatactgaaggagaagcaccacaacactctgcagtac
cagctccccctcagcaagggcgctctggtcagcatcttcagccagttcaccactcatcag
cagaggctgggtgtggaggactactctgtctcccagaccactttggatcaggtctttgtc
aactttgccaggtaccaacatgaggaggacaaccatgctacttatgacaacaaagtggac
gtgtccagcgaaatgcctatgaaaactcagaactcacctgtcccagagagcgcctga
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