Oncorhynchus tshawytscha (Chinook salmon): 112234757
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Entry
112234757 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112234757
03015 mRNA surveillance pathway
112234757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112234757
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112234757
mRNA cycle factors
P-body specific factors
112234757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
112234757
NCBI-ProteinID:
XP_024258820
LinkDB
All DBs
Position
LG03:34434956..34456956
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AA seq
490 aa
AA seq
DB search
MRSEKDQMPGGREKSVVEIQFRDIPREQDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEER
RKRKEADKLKKLSEKEIKIKLLKKSDWDDDMDSDRLKDKGDSGDTERAKWDKPSGQMKFK
EAKDKGQMESDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDR
AKKDGHHHGSYSYCPSTGDKVGKEDREGIGASRKDRTRNKVSDKARVCQSVLAHQDRGTS
QSEGPHQIGGALPNKDRPAMQLYQPGTRKCMGPASKGYELPIGQSPEHVAVDHCYEAIAM
GTGSEKSSED
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgcccggaggcagggagaaaagtgtcgtcgagatacaa
tttagagacattccgagggaacaggacgccgtctttgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagccggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagagaggaaaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaagagaaaaggaagcggagggaggaggagaga
cgcaaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagataaag
ctcctaaagaagagtgactgggacgatgacatggactctgacaggctcaaggacaaaggg
gacagtggggatacggagagggccaagtgggacaaacccagtggacaaatgaagttcaag
gaagccaaggacaagggtcagatggagagcgataagggagaacacggccgcaggcagaga
gacaaagaccatagaggaagagacgaggagaggaaacgacagcgccaccactatgagttt
gacaagttcatacggcgcaaggaggagaccaagtggggcaaaggctactgccaggaccgg
gccaagaaagatggccaccaccacggctcctactcctactgccccagtacgggtgacaaa
gtgggtaaggaggacagggagggcattggcgctagcaggaaggaccgcacccggaacaag
gtgagcgacaaggctcgtgtctgtcagtctgtgttagcccatcaggacagagggacgtcc
cagtcagaggggccacaccagataggaggggctctgccaaacaaggaccgaccggccatg
cagctctaccagcctggcactcgcaaatgcatgggcccagcgagcaaaggttacgagctc
cccatcggccagtcgccagaacacgttgcggtagatcactgctatgaggccattgccatg
ggaacaggctcggaaaagagtagtgaagattag
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