Oncorhynchus tshawytscha (Chinook salmon): 112236198
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Entry
112236198 CDS
T05605
Name
(RefSeq) sodium channel protein type 2 subunit alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112236198
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
112236198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
PFF1_TM
Zip
GPHH
IQ
New_glue
Motif
Other DBs
NCBI-GeneID:
112236198
NCBI-ProteinID:
XP_024260556
LinkDB
All DBs
Position
LG03:43026711..43079299
Genome browser
AA seq
2006 aa
AA seq
DB search
MMEQLLVPPGPDSFRPFCRESLDAIERRIADENAKKSKAKPNNDDDDGPKPSSDLEAGKS
LPLIYGDIPKGLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYVLNPFNPLRRI
SIKVLVHSLFSMVIMLTILTNCAFMTLSQPPDWTKNVEYTFTGIYTFESLIKILARGFCV
GKFTFLRDPWNWLDFCVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRNKCLRIPLNSTNLFDDSVDFNGTDLN
KTSSFNWTYYTNDPKNYYYLPGKKDALLCGNGSGAGLCPEGFWCIKAGRNPDYGYTSFDT
FSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYD
EQNQATIEEAQQKEEEFQKLKRQQEDAQAAAAVTAAESGEFSERGELTDTSSEASKLSSK
SAKERRNRRKKKKQREEEERGDNDKFHRSESEGSMQKSRFRFSIDASNLLNYDMRCSTPH
QSFLSIRGPLFSSRRNSQASLFSFRDRAQDMGSENDFADDENSTFEDNDSRRGSLFVPRR
SDRRSSNLSQNSMSSHVLLPTNGKKHSSVDCNGVVSLVGRASLPTSPEGLLLPEVTVDKA
STDDNGNTTEPEYRKARCESYQASMNFLEDPGARQRAFSVASVITNTMEELEESRQECPP
CWYKFANTFLIWDCCPAWLRIKKRVKMIVMDPFVDLTITICIVLNTVFMAMEHHSMSGDF
KRMLSVGNLVFTGIFTAEMCFKIIALDPYCYFKEGWNIFDGIIVSLSLMEIGLANVSGMS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNY
RDCVCKISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVM
VIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIGRIHQGIAFVKALVCRSFHS
ICLRKKKGSLNEDKPLDDLHRTNYNSNHTTVEIMKDPEYVKDDNGTTGGVGMGVGSNAAG
KYIVNDNTDYMQFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDIEGSKEQLSKDRPL
SSSEGSTVDIRPPGEREGSVDMEPEESMEAEGCFTDGCVRRFQCCQVNVEKGKWKMWWTL
RKTCFRIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEFADKVFTYIFILEM
LLKWVAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYAELSAIKSLRTLRALRPLRAL
SRFEGMRVVINALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCINMTTRERFEV
RDVANKTECLALKGTHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLDDQP
DYEVNLYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPVNKFQGFVFDFITKQAFDIVIMILICLNMVTMMVETDDQENDIRK
ILYNINLVFIVMFTGECILKMISLRQYYFTIGWNVFDFIVVILSIIGMFLSEVIEKYLVS
PTLFRVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN
FAYVKKESGIDDMFNFETFGNSMICLFQITTSGGWDVLLAPILNKGEPDCDSRKEHPGST
YKGGDCGNPSVAIIFFVSYIIICFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWEKFDARATQFMVYDKLSDFADALDPPLRISKPNKIQLSSMDLPMVSGERIHCLDILFA
FTKRVLGEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKLEDMSALVIQRAFRRYL
LKRIVKRASAMYKEKIQSGGTLLDKEVLVIDKFPEISTSDRTDMTPSTASPPSYDSVTKP
EKNKYEKDKRKKEVKEKKKYMDVGKI
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atgatggaacagctgcttgtaccgccaggaccagacagcttccgcccgttttgtcgtgag
tccctcgatgccatcgagaggcggatcgctgacgagaacgccaagaagtccaaggcgaag
cccaacaacgatgacgacgatgggcctaagcccagcagtgacctggaggctggcaaatca
ctgccactcatatatggggacattcccaaaggattggtgtctacaccactggaggacttg
gacaccttctacagcaatcagaaaacctttatagtgttgaaccgagggaaggccatcttc
cgcttcaacgccactcctgcattgtatgtcttaaaccccttcaaccctcttagaagaata
tcaattaaggttttggtacactcattgttcagcatggtaatcatgttgactatccttacc
aactgtgcgtttatgaccctgagtcagcccccggactggacaaagaatgtcgagtacaca
ttcactggaatctatacatttgaatctcttataaaaattctggcaaggggcttctgtgta
gggaagtttacctttctccgagacccatggaactggttggatttctgtgttattgtcatg
gcatatgtcacagagtttgtggacctgggcaatgtctcagcactgagaacgttcagggtt
ctccgagctttgaaaactatatcggtcatcccaggcctgaagaccattgtgggagcgctg
atccagtcagtgaagaaactgtcagacgtgatgatcctcactgtattctgcctaagtgtc
tttgccctagtagggctgcagctgttcatggggaatttaagaaacaaatgtttaaggatc
cctcttaactcaaccaacctctttgatgattcagtcgactttaatgggacggacctcaac
aagaccagctcgttcaactggacctattacacgaatgatcccaaaaattattactacctc
ccaggtaaaaaagatgctttgctttgtggaaatggcagtggtgccgggctgtgcccagag
ggattctggtgcatcaaagcgggccggaacccagattacggctacaccagttttgacacg
ttcagctgggccttcctgtctctgttcagactgatgactcaggactactgggagaacctc
taccagcagaccctgagggctgctgggaagccatacatgatcttctttgtgttggtcatc
ttcctgggctccttctaccttatcaacctaatcctggctgtggttgccatggcctacgac
gagcagaaccaggccaccattgaggaggctcagcagaaggaggaggagtttcagaagttg
aagagacagcaggaggacgcacaggcggcggcagcggtgacagcggctgagagtggggag
ttcagtgagagaggggagctcactgacacctcctccgaggcctccaaactcagttccaag
agtgccaaagagagacgcaacaggcgcaagaagaaaaagcagagagaagaggaggagaga
ggggacaatgacaagtttcacaggtctgagtctgagggcagcatgcaaaagagtcgtttc
cgcttctccatagatgcctccaacctgctcaactacgacatgagatgttccacaccacac
cagtccttcctgagtatccgtggacccctgttctcatccagacgaaacagccaggcaagc
ctcttcagcttccgggaccgagcgcaagacatgggctcggagaacgactttgccgacgac
gagaacagtactttcgaggacaacgacagtcgccgaggatctctgtttgtcccccggcgg
agtgaccggcgctccagcaacctcagccagaacagcatgtcgtcacatgtcctgttgccc
accaatgggaagaagcacagctccgtggactgcaatggggtggtgtccctggtgggcagg
gcttcacttcccacatcacctgagggactccttctgccagaggtgacagtagataaagcc
tctaccgatgacaacggcaacactacggagccagagtacagaaaggcccgatgtgaatcg
taccaggcctctatgaacttcctggaggacccaggggccaggcagagggccttcagtgta
gctagtgttataactaatactatggaagaacttgaagagtcgagacaggaatgccctcct
tgctggtacaagttcgccaacaccttcctcatctgggactgttgtccggcatggctgagg
atcaagaagagagtcaagatgatcgtgatggacccgtttgtagacctgactatcaccata
tgtattgttctgaacacagtgttcatggctatggagcaccactcaatgtctggggatttc
aaaagaatgctttctgtgggaaacctggtgttcacaggtatcttcacagctgagatgtgt
ttcaagattattgctttggatccgtactgttattttaaggaaggctggaatatatttgat
ggtatcattgtcagtttgagcttgatggagattggcttggccaacgtgtctggaatgtct
gtcctcagatcattccgattgctgagagtgttcaaactggccaagtcttggccgacactg
aacatgctgatcaagatcattggtaactcagtgggggctctgggtaacctcaccctggtc
ctggccatcatcgtcttcatcttcgcggtggtgggcatgcagctgtttgggaagaactac
agagactgtgtgtgtaagatctctacagactgcacactgccccgctggcacatgcatgac
ttcttccactccttcctgattgtgttccgggtgctgtgtggggagtggatcgagaccatg
tgggactgtatggaggtggctggccagagcatgtgtctcatcgtcttcatgatggtcatg
gtcatcgggaacctggtggtcctgaatctgttcctggccctgctgctgagctcgttcagt
gctgataacctggcggccacggatgatgacagcgagatgaacaatctgacggtggccata
ggccgcatccaccagggcatcgcctttgtcaaggccttggtgtgccgctccttccacagc
atctgtctgaggaaaaagaaggggagcctgaacgaagacaagcccctggatgacctccac
agaaccaactacaactccaaccacaccactgtggagatcatgaaagaccctgaatacgtg
aaggatgacaatggcaccaccggtggggtaggcatgggagtgggtagcaatgcagcaggg
aagtacatagtcaacgacaacactgactacatgcagttcatccacaaccccagtctgacc
gtcacggtgcccatcgctgtgggggagtcggactttgaaaacctcaacactgaggacttc
agcagcgattcctcggacatagagggaagcaaagagcagctaagtaaagaccgtccactg
agctcatcagagggcagtacagtggacatcaggcccccaggagagagagagggttcggtg
gacatggagcctgaggagtccatggaagctgaaggatgcttcactgatggctgtgtccgt
agattccaatgctgccaagtgaacgttgagaagggcaagtggaagatgtggtggacattg
aggaagacctgcttcaggatagtggagcacaactggtttgagagctttatcatcttcatg
atcctgctcagcagtggagcgctggcatttgaggacatctacatcgaacagaggaagacc
attaagacggtgttggagtttgcggacaaagtcttcacctacatcttcatcctggagatg
ttgctgaaatgggtggcctatggatttgccaaatacttcaccaacgcctggtgctggttg
gactttcttattgttgacgtctctttggtcagccttgtggccaacgccctgggctacgct
gagctgagtgccatcaagtccctgaggacgctgcgagcgctgaggcccctgagagcgctg
tcccgcttcgagggcatgagggtggtcatcaacgctctgcttggagccatcccctccatc
ttcaatgtgctgctggtgtgcctcatcttctggctcatcttcagcatcatgggtgtcaac
ctgtttgcagggaaatactaccattgtatcaacatgaccacgagggagcgcttcgaagtc
agagacgtggcaaacaagacagaatgtttggctttgaaaggtacccactggaagaatgtc
aagatcaactttgataacgtgggagcaggctatctggcactgttacaagtggctacattc
aaaggctggatggatatcatgtatgcagctgtggactctcgcaatttggatgatcaaccc
gactacgaagtgaatctgtacatgtatctgtactttgtggtattcatcatatttggatcc
ttcttcacactcaacctcttcattggtgttattatagacaacttcaatcagcaaaagaaa
aagtttggaggtcaagacatcttcatgacagaggaacagaagaaatactacaatgctatg
aagaagcttggctcaaagaaaccccaaaagcctatccctaggccagtgaacaagtttcaa
ggatttgtttttgatttcattacaaagcaagccttcgacattgtcatcatgattcttata
tgccttaatatggtcaccatgatggtggagacggatgaccaggaaaacgacattcgtaaa
attctctacaatatcaacctggtgtttattgtcatgttcaccggagagtgtattctgaag
atgatctcactccgacaatactactttaccattggttggaatgtatttgactttatcgtt
gttatcctgtcgataattggtatgtttctctcggaagtgatagagaagtacttggtttca
ccaaccttattccgagtcattcgactggcccgaattggccgtatccttcgcctcatcaag
agtgccaagggaatccgtacactcttgtttgcgttgatgatgtcacttcctgcattgttc
aacattggtcttctgctcttcttagtgatgtttatctatgcaatctttggcatgtccaac
tttgcatacgtcaagaaggagtctgggattgacgacatgttcaactttgagacgttcggc
aacagcatgatctgcctgttccagatcaccacgtcagggggctgggatgtcctgctggcc
cccatcctcaacaagggagagccagactgcgacagccggaaagagcacccaggaagcacg
tacaaggggggagactgtggaaacccctctgtggccattatcttctttgtgagctacata
atcatatgtttccttgttgtggtcaacatgtacattgctgtcatcttagagaacttcagt
gtggccactgaggagagcgctgagcccctgagcgaggatgactttgagatgttctacgag
gtctgggagaagtttgatgcgcgggccacccagttcatggtgtatgacaagctgtcagac
tttgctgacgccctagaccccccgctacgcatctctaagcccaacaagatccagttgagc
tcaatggatttacccatggtgagtggggagcgcatccactgcctggacatcctgtttgcc
ttcaccaaacgtgtcctgggcgagggcgaaggcttggacatcctccggggtcaaatggag
gagcgctttatggcctccaacccctccaaggtgtcctacgaaccaatcaccaccacactg
cgccgcaagctagaggacatgtctgccctggtcatccagagagctttcagacgatatctt
ctcaagcgtattgttaagcgggcctctgccatgtacaaggagaagatacaaagtggaggc
acgctccttgataaagaggttctcgtcatagacaaatttcccgagatctctacttcagac
agaactgacatgacaccctccacagcttctcccccatcatatgacagtgtcacaaaacct
gaaaaaaacaaatatgaaaaagacaagagaaagaaggaggtgaaggagaaaaaaaagtac
atggatgttgggaagatttag
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integrated database retrieval system
