Oncorhynchus tshawytscha (Chinook salmon): 112238108
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Entry
112238108 CDS
T05605
Name
(RefSeq) voltage-dependent P/Q-type calcium channel subunit alpha-1A isoform X1
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112238108
04020 Calcium signaling pathway
112238108
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112238108
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112238108
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
112238108
NCBI-ProteinID:
XP_042163009
LinkDB
All DBs
Position
LG27:complement(21280683..21423631)
Genome browser
AA seq
2308 aa
AA seq
DB search
MDFVVVCTGILSTVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGL
LLFFAILMFAIIGLEFYMGKFHTTCFDIHTDEIREEVPCGTEAPSRLCPNGTTCRKYWLG
PNYGITQFDNILFAVLTVFQCITMEGWTDLLYYSNDASGSAWNWMYFIPLIIIGSFFMLN
LVLGVLSGEFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILADDEDPDAF
DGTRRRPTIKNHKNKTDLLNPEDGNGDLAVGSPFARASLKSSKLEGSNFHKRERRLRFFI
RRIVKTPYFYWSVLCLVGLNTMCVAVVHYDQPEPLSDFLYFAEFVFLSIFMSEMGIKIYG
LGSQPYFHSSFNCFDCIVICGSIFEVLWGFIQPGTSFGISVLRALRLLRIFKVTKYWASL
RNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFESGTPPTNFDTFPAAIMT
VFQILTGEDWNMVMYDGIESQGGVNNGMVFSVFFIVLTLFGNYTLLNVFLAIAVDNLANA
QELTKEEEAASKKNVLQKAKEVAEVSPQSAANLSIAAEKVNSTGHNASDPFLDCKEQQKN
NKGGNKSVWEQRTKELRKQTLMTSREALYNELDPEDRWKVNYSRHIRPDMKTHTDRPLVV
DPQENRNNNTNKTTKEPDPPPSQQHADELVRKQTHVHERGGGGGGGGGSGSGSGPGRPYE
RADSTESRRSRKESKEHQELQHHHSSHTRLDATMLGQSGEERPQRRHHHPRGQVGSSEHR
KPRQHRMPPEDEEGGGGGGGGGGGGGGERRHKSRGTEGEGEGEQEGGDGGERRQRRHRHG
TQSGCDGEGKRTRQHRRKDGPNLSTTRPIQKSLCRQDSQYSEDMDNVMNSKLATSQPQLT
PGSTQQPCPASGLPSPANHNTPGPGFGPAGLNTHLTNSSSHLGLDGSLVPAYGSSTRIPD
HTAVDIPPMFPSHNAILQVNKNANTEPLPKKEDKEDDDDEKGDEDGPKPMPPYSSMFILS
TTNPFRRLCHYIVTLKFFEFGILSTIAMSSIALAAEDPVWPESPRNNVLRYFDYVFTGVF
TFEMLIKMVDLGLVLHQGSYFRDLWNILDFIVVSGALVAFAFTSSSGGSSKGKDISTIKS
LRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVVAVQLFKGRFF
YCTDESKEFERDCRGEYLVYERNNEVKAQKREWKKYDFHYDNVLWALLTLFTVSTGEGWP
QVLKHSVDATYENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMME
DYSLEKNERGCIDFAINAKPLTRHMPKNKQSFQYRMWEFVVSPPFEYTIMAMIALNTIVL
MMKYDGASPAYEAVLANLNIVFTSLFSMECVLKIIAFGVLNYFKDAWNIFDCVTVLGSIT
DILVTELGMNNFINLSFLRLFRAARLIKLLRQGETIRILLWTFVQSFKALPYVCLLIGML
FFIYAIIGMQLFGNIGMEEEEGSAINEHNNFRTFFQALMLLFRSATGEAWHDIMLSCLGG
KLCDPLAGNTEPECGSQFAYLYFVSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILGPHH
LDEYVRIWAEYDQAACGRIHYKDMYSLLRVIDPPLGLGKKCPHRVACKRLLRMDLPVADD
NSVHFNSTLMALIRTALDIKIAKGTEGGVDKHQMDAELRKEMMAIWPNLSQKTLDLLVTP
HKSATDLTVGKIYAAMMIMEYYRQSKAKRSQARLEAEQNRTTLLFQRVEPPSPIQDGPLC
LPPTQPADPINTLPVEGGVPESQSWVTVRAQEMSQRVGSWSPEGQHSEDGLGSRHNSQTV
EMREMGRDGYSDTEHFQPMDGHGRAASMPRLPGDNQTITDNSPMKRSASSLGHSRSGRGQ
RERGGADDYAMEYVIPEEGGAPRHSHRRRDRSHRASERSLCRYTDADTGLGTDLSTTTQS
GDLPPKEKDRDRDRDRSRQKDRKHHHHHHHHHSGSVDKERYTPDRADRGGEHGGHRQPRG
DRDHDRDREHDRRWSRSPSEGRECMTHRQGSSSVSESPAPSTSGTSTPRRGRRQLPQTPA
TPRPHVTYSPVVRKAMATPPGAQPLGRNPAPAPHRFSPEPPQGPPPPHHGSPNQACHPPP
RWGDGGGGGGESGSLEGDGCFYNQDYQDYDREHHKPPPYEQSPTQGNPHKPHPLNHPTLP
VLNHPPTPQQQHPINPHPNNPHPNNPHSRTSPRTSRHAPPPNTTPPPPRAAATPHSTSPQ
RVPRLFPLLATPPRPHPPRAPQGPPSPA
NT seq
6927 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgtagtagtatgcacagggattctgtctacagtgggatcggacttcgatttg
cggactctgagagcggtccgtgtgctgagacccctcaaactggtgtctgggatacccagc
ctccaggtggtcctcaagtccatcatgaaggctatgattccactgctgcagatcggcctg
ttgctattcttcgccatcctcatgttcgctatcatcggcctggagttctacatgggcaaa
ttccatactacctgcttcgacattcacacagatgagattcgtgaggaagttccgtgtggg
accgaagccccgtcgagactatgtccaaacgggaccacgtgtcgaaagtattggctgggg
cctaactacggcatcacccagtttgacaacatcctgtttgccgtgctaacagtcttccaa
tgtattaccatggagggatggactgacctgctctactatagcaatgatgcctcagggagc
gcgtggaactggatgtacttcattcccctcatcatcatcggctctttcttcatgttgaac
ctggtcctgggtgtactgtctggggagtttgccaaagagagagagcgagtggagaacagg
agtgagtttctaaagctgaggagacagcagcagatagagagagagctcaatggatacctg
gaatggatttgtaaagcagaagaagtgatcttagcagatgatgaagaccctgatgccttt
gacggcacccgcaggagacccaccatcaaaaaccacaagaacaaaacagatctccttaac
ccagaggatgggaatggagacctggcagtgggttctccctttgcgcgggccagtctgaag
agttccaagctggagggctctaacttccataagagggagcgtcgtctgcgtttcttcatc
cgacgcattgtgaagaccccgtatttctactggagtgtactgtgtctggtgggacttaac
accatgtgtgtggctgtagtacactacgaccagcctgaaccactctcagacttcctctac
tttgcagagttcgtcttcttgagtatcttcatgtctgagatgggtataaagatttatgga
ctggggtcacagccttactttcactcctcctttaactgcttcgactgcattgtaatatgt
ggcagcatattcgaggtgctgtggggttttatccagcctgggacatcctttggtatcagt
gtattacgagctctaaggttactgagaatcttcaaagtcaccaagtactgggcgtctttg
aggaacctggttgtatctctgctcaactccatgaaatccattataagcctgctcttcctc
ctcttcctctttatcgtcgtcttcgctctgttgggcatgcaactcttcggaggacagttt
aattttgaatctggcactcccccaaccaactttgatactttccctgcagcaataatgact
gtgttccagatcctgaccggagaagactggaacatggtcatgtatgatggaatagaatct
cagggaggagtcaacaacgggatggtcttctcagtcttcttcattgtgctcacgcttttc
ggcaactacactctgctgaatgtgtttttggccattgctgtggacaatctggccaacgca
caggaactcactaaggaagaggaagccgcttccaagaaaaatgttttgcaaaaagccaag
gaggtggccgaagtcagccctcagtctgcagccaacctgtctatagcggccgagaaagta
aacagcacaggtcacaacgcttccgacccctttctggactgtaaagagcagcagaagaac
aataagggtggtaataagtccgtgtgggaacagaggaccaaggagctgaggaaacagact
ctaatgaccagcagagaggccctctacaacgaactggacccagaggaccgctggaaggtg
aactactcccgccacatccgtcctgacatgaagacccatacagaccgccctctagtggtg
gacccccaggagaaccgcaacaacaacaccaacaagaccaccaaagagcctgatcccccc
cccagccagcagcacgctgacgagctggtccgcaagcagacacacgtccacgagagagga
ggtgggggaggaggaggtgggggctcagggtctggttcaggccctggaaggccttacgag
cgggcagactctacggagagccgcaggagccgtaaggagagcaaggagcaccaggagctc
caacaccaccactcctcccatacccgcctagatgcaacgatgctgggacagagtggagag
gagaggccccagagaaggcaccaccacccacggggccaggtgggctcatcggagcacagg
aaaccccgccagcaccgcatgcccccagaggacgaagaggggggaggtggaggtggtgga
ggaggaggaggaggaggaggggaaaggcgacacaagagcagggggacagaaggagaaggc
gagggggagcaagaagggggtgatggaggtgagaggaggcagagacggcatcgccatggc
actcagtcagggtgtgatggtgaggggaagaggacgcggcaacaccgcaggaaggatggt
cccaacctgtccaccacacggcccatccagaagagcctctgtagacaggacagccagtac
agcgaggacatggacaatgtcatgaacagtaaattggccaccagccagccccagctaacc
ccaggctccacccagcagccctgcccagcctcgggtctccccagcccagccaaccacaat
actccaggcccaggcttcggccctgcaggcctcaacactcacctgaccaacagcagctcc
cacctgggcctagatggaagcctggttcctgcatacggaagtagcacccggataccggac
cacacggcagtggacataccacccatgtttccttcccacaacgccatattgcaggtcaat
aagaatgctaacacggagcctctgcctaagaaggaggataaggaggatgatgatgatgag
aagggtgatgaagatggacccaaaccaatgcctccctatagctccatgttcatcctctct
accaccaacccgttccggagactatgccactacattgtgactctgaaattctttgagttt
ggtatcctgtctaccatcgctatgagcagtatcgccttggcagcagaagaccccgtctgg
ccagaatcacctcgcaacaatgttctgcgctactttgactatgtgtttacgggagtgttc
acctttgagatgttgattaagatggtggatctgggcctggtgttgcaccagggctcctat
ttccgtgacctgtggaacatcctggactttatagtggttagtggtgctctggtggccttc
gccttcacgagcagtagcgggggaagcagtaaggggaaagacatcagcacaatcaagtct
ctgagggttctgagagtgttgcgacctctgaagactatcaagcgtcttccaaagctcaag
gctgtgtttgactgtgtggtcaactccctgaagaacgtcctgaacatcctcatcgtctac
atgctcttcatgtttatttttgctgtggtggccgtgcagctgttcaaagggagattcttc
tactgcactgacgagtccaaagagtttgaacgcgattgcaggggcgaatatctagtctat
gagcggaataatgaagtgaaggcgcagaagcgggagtggaagaagtacgatttccactac
gacaacgtgctttgggccctgctcaccctcttcaccgtgtctaccggagaggggtggccg
caggtgctgaaacattcagtggatgcgacctatgagaatcagggcccgagcccggggtac
cggatggagatgtccatcttttacgtggtgtacttcgtggtcttccccttcttcttcgtc
aatatcttcgtagctctcatcatcatcactttccaggagcaaggagacaagatgatggag
gattacagtttagagaaaaacgagagaggctgcatagacttcgccattaatgccaaaccg
ttgacgcgacacatgcctaagaacaagcaaagcttccagtaccgcatgtgggagtttgtg
gtgtcgccgccattcgagtatacaatcatggctatgatcgcgctcaatactatcgtactg
atgatgaagtatgacggagcctctccggcctacgaggctgtgctggccaacctgaacatc
gtgttcacctcgctgttctccatggagtgtgtgctcaagatcatcgcctttggagtgctg
aattacttcaaagatgcctggaacatttttgactgtgtgacagtcctgggcagcattaca
gatattttagtgactgagctcgggatgaataacttcatcaacttgagtttcctgagactg
ttcagggctgccaggctcatcaaactgctccggcagggagagaccatccgcatcctgctc
tggacctttgttcaatccttcaaggcgctgccgtacgtgtgcctgcttatcggcatgctg
ttcttcatctatgccatcatcgggatgcagctgtttgggaacatagggatggaggaggag
gaggggagcgccatcaacgagcacaacaacttcaggactttcttccaagctctcatgctg
ctcttcaggagtgccacgggcgaggcgtggcatgacatcatgctgtcgtgtcttggaggg
aagctctgtgatcctctggcagggaacactgaaccagagtgtggcagccagtttgcctac
ctctactttgtgtccttcatcttcttctgctccttcctgatgctgaatctgtttgtggct
gtcatcatggacaactttgagtacctgaccagagactcctccatcctcggcccacatcat
ctagacgagtatgtcaggatatgggctgaatatgaccaagcagcttgcggtcgcattcat
tataaggatatgtacagtttattgcgagttatcgacccgcctcttggcttaggaaagaaa
tgcccccatagagtggcctgcaagaggctgctgcggatggacctcccggtcgccgacgac
aactcagtccacttcaactccaccctgatggccctgatccgcacggcgctggacatcaag
atcgccaagggtacggaaggaggtgtggacaaacaccagatggatgcagagctgaggaaa
gagatgatggcgatttggcccaatctctcccagaagaccctggacctcttagtcacgcca
cataagtcagcaacagacctgacggtggggaagatctacgctgccatgatgatcatggag
tactacaggcagagcaaggccaagcgctctcaggcgcggctagaggcggagcagaatcga
acgacattactgtttcagcgcgtggagccgccctcccccatccaggatgggcctctctgc
ctccctcctacccaaccggcagatcccatcaacaccctaccggtggaggggggggttcca
gagagccagtcgtgggtgacagtgcgggctcaggagatgtcccagagagtaggcagctgg
agtcctgagggacagcactctgaggatggcctgggcagcaggcataactcgcagacggta
gagatgagagagatggggcgtgacggttactcagataccgagcactttcagccaatggac
ggccacggaagggctgcttccatgccacgccttccaggcgacaaccaaactataacagat
aatagtcctatgaagcgctcggcctcctcccttggtcacagtcgatctgggaggggccag
agggaaaggggaggggccgatgattatgcaatggagtatgtgatccccgaggagggtgga
gcaccgaggcacagccaccgacgccgcgaccgaagccaccgggcctccgagcggtcactg
tgtcgatatacagacgcagatacaggactgggcacagacttgagcaccaccactcagtca
ggtgacctgccacccaaggagaaggaccgtgaccgcgacagagaccgcagtcggcagaaa
gaccgcaaacaccaccaccatcaccaccaccatcacagcggctctgtggacaaggagcgc
tacacaccagaccgcgccgaccgggggggagagcacggtggtcacagacagccccgagga
gacagagaccacgaccgggatagggagcacgaccgtcgttggtcacggtcacccagcgag
ggcagagagtgcatgacacacagacagggcagtagttcggtgagcgaaagtcccgctccc
tctacctcggggaccagtaccccgagacgaggccgtcggcaactccctcagaccccggca
acgccccgcccacacgtcacctactctcctgttgtccgtaaagccatggccacacctccc
ggagcacagcccctggggcgcaatcccgcccccgcccctcaccgcttctcccctgagccc
ccccagggacctcccccgccccaccatggctcacccaaccaagcctgccacccccctccc
cgctggggggatgggggaggaggaggaggagagagtgggtcgctggagggcgacggctgc
ttctacaaccaggactaccaggattacgaccgtgagcaccacaaaccgcctccctacgag
cagagccccacacagggcaaccctcacaagcctcaccccctcaaccaccctactcttccc
gtgctaaaccatcccccaaccccacagcagcagcaccctatcaacccgcacccaaacaac
ccccaccccaacaacccccactcccgcacctcgcccaggacttcccgccacgcgccccca
cccaacaccacccccccacccccaagggcagcagccaccccccactcgacgtctccccaa
cgggtaccgcgcctcttccccctcctcgcaacaccaccacggccccacccaccccgggcc
ccacaaggtcccccctccccagcctag
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integrated database retrieval system
