Oncorhynchus tshawytscha (Chinook salmon): 112245729
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Entry
112245729 CDS
T05605
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112245729
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112245729
09142 Cell motility
04820 Cytoskeleton in muscle cells
112245729
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112245729
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Others
112245729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112245729
NCBI-ProteinID:
XP_024269636
UniProt:
A0A8C8GL05
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Position
LG32:10702332..10717662
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AA seq
687 aa
AA seq
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MTRARIYRESLLVILLQIILICSAQRGLVGLRGPAGPPGIAGVPGVDGIDGDRGDDNFTE
GGPGPDGEDGKPGTPGTPGLPGADGATGPVGGLGQDGPPGPKGEPGEAGEVGEIGEGPDG
PDGAAGAQGLVGELGKVGTPGSLGRRGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGVKGESGEPGKQGHKGEEGDQAGEGEMGAQGLPGQGGPRGITGMMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGLVGENGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDAGLQGLPGLPGAYGPKGKSGEMGNSGNPGSVGLMG
SPGKSGERGEQGEVGPVGARGGSGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSTGRPGETGNKGPEGGRG
IPGAEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPETGISGLPGPPGPPGPTGPSGENGYPGLDGARGLPGLKGPPGLLGRKGPKGDTGDRG
DRGPTARGVKGAPGAPGLPGDHGRAAYGTDGRDGERGPHGVPGIPGVPGSPGRPGLNGYC
ESSQCILPMVASPISAKDSSMKGPNEE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcgccaggatatatcgggagtcattactggtgattttattgcaaatcatcctt
atttgctccgctcagaggggcctggtcggtctcagaggccccgcaggaccccctggaata
gcaggagtgcctggagttgacggcattgatggagacagaggggacgataacttcacagaa
ggcggccctggccctgatggggaagacggcaaaccaggaactcccggaacacccggccta
ccaggggcagacggtgccactggacctgttgggggtctcggccaagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgagggacctgatggg
cctgatggagcagctggtgcacaagggttggtgggcgagcttggcaaagtcggaacccca
ggatcactgggaaggagggggccagtggggcttcccggacctgcagggcccaggggtctt
cctggagtgtataagggggaagacctgtgtcctaatgcctgtccttctggtcttaatgga
tattctggcctcccaggcatgaagggccacaaaggggtaaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagagggcgagatgggagct
caaggactaccaggccaagggggacccaggggaataacaggcatgatgggcctcaaaggt
gacaggggaccacgtggaacatttggagacctcggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggattagtgggcgagaatggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccagggggcaaaggggagcctggtcttgctggg
cccgatggacgtgaaggaatccccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatgctgggctgcaaggactccctggtttgccaggcgcttatggtcct
aaaggaaaaagtggcgagatgggtaactctggcaaccccggttctgtaggactaatgggg
tctcctgggaaatccggggaacgtggcgagcagggagaagtgggacctgtcggagcaaga
ggtggatcaggtgaaagaggagtgcgtggcccagacggacctgcaggggcacctggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagca
ggttcagagggcaccgcgggagacagaggggactttggtgacgaaggggagccaggagag
aaaggatcgacgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcgcagagggcaagccgggccaacctggaccacgtggcatgcagggagacaga
ggggtgccaggactgccagggacacaggggccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgagacaggcatctctggactgccaggtccccctggcccccctggtcctaca
ggcccttccggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccaggactactgggtcgcaaagggcccaaaggtgacacgggcgacagagga
gacagaggacccacagcgagaggggttaaaggagcacctggagcacccggtctaccaggt
gatcacggtagagccgcctatggcacagacggccgcgacggcgagagagggccacacggc
gttcccggtattcccggcgttccagggtctcctggtcgtcctggcctcaacggctactgc
gagtcgtcacagtgcatccttcctatggtggcatcaccgatatccgcgaaagattccagc
atgaaagggccaaatgaggaataa
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