KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112247043
Entry
112247043         CDS       T05605                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC5 isoform X1
  KO
K03007  DNA-directed RNA polymerases I, II, and III subunit RPABC5
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03020  RNA polymerase
otw03420  Nucleotide excision repair
otw04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112247043
  09124 Replication and repair
   03420 Nucleotide excision repair
    112247043
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    112247043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112247043
   03400 DNA repair and recombination proteins [BR:otw03400]
    112247043
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     112247043
  RNA polymerase III system
   RNA polymerase III
     112247043
  RNA polymerase I system
   RNA polymerase I
     112247043
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      112247043
SSDB
Motif
Pfam: RNA_pol_N YABBY
Other DBs
NCBI-GeneID: 112247043
NCBI-ProteinID: XP_024271454
LinkDB
Position
LG04:complement(69208767..69209884)
AA seq 96 aa
MFFLCAFLSVCKGYCGTYFTLQAPVDRIKMIIPVRCFTCGKIVGNKWEAYLGLLQAEYTE
GDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK
NT seq 291 nt   +upstreamnt  +downstreamnt
atgttcttcctgtgtgcgttcttgtctgtttgcaagggttactgcggaacatattttact
ttacaggccccagtcgatcggatcaaaatgattatcccggtccggtgcttcacctgtggg
aaaatcgttgggaataaatgggaggcgtaccttggcctccttcaagctgaatacactgaa
ggtgatgcccttgatgctcttggtctgaagaggtattgctgtcggaggatgctgctggct
catgtagacctcattgagaagttgctgaattatgcacccctggagaaatga

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