Oncorhynchus tshawytscha (Chinook salmon): 112247071
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Entry
112247071 CDS
T05605
Symbol
tardbpb
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112247071 (tardbpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112247071 (tardbpb)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112247071 (tardbpb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
RL
OB_RNB
Motif
Other DBs
NCBI-GeneID:
112247071
NCBI-ProteinID:
XP_024271496
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Position
LG02:complement(16125067..16128961)
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AA seq
406 aa
AA seq
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MAEVYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
ILHAPENGWGNLVYVVNYPKDNKRKMDEIDASSAVKMKRGDMKTSDLIVLGLPWKTSEQD
LKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQDKVISQRHMIDGRWCDCKLPN
SKQGPDEPMRSRKVFVGRCTEDISADELRQFFMQYGEVTDVFIPKPFRAFAFVSFADDQV
ASSLCGEDLIIKGVSVHISNAEPKHGSRQMMERAGRFGNGFGAQGFGSNRTGLGSSAGSN
MANFGNFSLNPAMMAAAQAALQSSWGMMGMLASQQGQTATSGTTSTGQTSSTRDQSQAYS
TGNSNYGASSASLGWGTGSNSTTSGGGFSSGGFGSSMESKSSGWGM
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggtgtacattcgcgtggccgaagaagagaatgaggagcccatggagatccca
tccgaggatgatggcacggtgttgctttctactgtggcagctcagtttccaggggcctgc
ggcctacgattcaggagtccagtttcgcagtgcatgcgaggggtccgtttggtggaaggg
attcttcatgcacctgaaaacggctggggcaatttggtctatgtcgtcaattatcccaaa
gacaacaaaaggaaaatggacgagattgatgcctcctcggctgtaaagatgaagaggggt
gacatgaagacttcagacctgattgtactggggttgccatggaagacatctgaacaggac
ctgaaagattacttcagcacctttggggaagtcatcatggtacaggtgaaacgagatgtg
aagactggaaactcaaagggatttggctttgtgaggtttactgagtatgaaactcaagat
aaagtgatctctcaacgccacatgattgatggaagatggtgtgactgcaaactccccaac
tccaagcaaggtccagatgagcccatgaggagcaggaaagtgtttgtaggccgttgcact
gaagacatttccgctgatgagctgcgccagttcttcatgcagtatggcgaggtcactgat
gtcttcatccccaagccctttcgtgcctttgccttcgtcagctttgccgatgaccaggtt
gccagttccctatgtggagaggacctgattattaagggggtcagcgtgcacatctcaaac
gctgagccaaagcacggcagtaggcagatgatggagcgagcagggcggtttggaaatggg
tttggggctcagggctttggtagtaaccgcacagggttagggagcagtgccgggagtaat
atggctaattttggcaactttagtctgaaccctgccatgatggctgctgctcaagctgcc
ctgcagagcagttggggaatgatgggtatgttggctagccaacaagggcagactgccacc
tcaggcaccacctctactgggcagactagctccaccagggatcagagccaggcctacagc
acaggcaacagtaactacggcgccagctcagccagtctaggttggggtaccggttctaat
tcaacaaccagtggcggtgggtttagctcaggaggatttggctccagtatggagtccaag
tcttcagggtggggtatgtaa
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