Oncorhynchus tshawytscha (Chinook salmon): 112247141
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Entry
112247141 CDS
T05605
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112247141 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112247141 (ttc37)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
112247141 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_17
TPR_8
TPR_14
TPR_16
TPR_11
TPR_9
TPR_12
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_15
ANAPC3
TPR_EMC2
ARM_TT21_C
Fis1_TPR_C
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
112247141
NCBI-ProteinID:
XP_024271599
LinkDB
All DBs
Position
LG04:complement(14754113..14788375)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEAIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGANKAELLQLWQQMTCLLSDSMEDHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSANYLKCLSQLSHEECKIKEACESILALYPSQTFPL
EILGAHHLKSGVCSENAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGAGEEALGQKLLRLRLEALVRTGD
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLVL
RGLAHIAQGHHQLAEQSLLQAAAQSPTCGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMNEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARCLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTVLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELRTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVHVYSSTPLEVLHDLAGLALAYCRAGLIPESISAYEKALMVTS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGTTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAG
TALPASVLEQLSSAVSANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMSKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMSA
RETRRLLERLVYFSSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDSRLLE
FHTRLTSC
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggctctaaaacactgcaaggctgccctgaaactagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaggcgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctaacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggatcacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctctgacaatgtgcctggcgaggac
catcggaagctctcagctaactacctcaaatgcctttcacaactttcgcatgaggagtgt
aaaattaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgagaacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtggggctggagaa
gaggcactgggacaaaagctcctgaggctgaggctagaggcccttgtgaggactggggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtatccacggagctgctgaactctcaccctgacctggctgagggactggtgctg
aggggactggcacacattgcacagggacatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccaacctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaatgagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatatagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgcagcagaatacctgcagatcatagcccaggaggactatgtg
cctgccctcaaaggtcttggggagtgtctgctgtccttggccagatgcctgatggaggac
tatagagatggaggagccatagacctcatccagcaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccaaggccaccttctcaaccaaggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagatggagcacaacacc
gtgctactgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaacgccctgggagtggttgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagacagtgttgagctctcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcaggacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctaaagaagcaggcagtgctggct
taccagagagctgtggagttgctgcaggcgacgccttccgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcacgtt
tactcttccacacctctagaggtgctccacgacttggctggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtgacctct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactccgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggcttgtccatggggacagcaccctggccagc
gcggccctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaacgc
tgcctgctcacctgcaccctgctggccctgcagggcaactacagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccctgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgttgcg
tgtctctccagcatgacccaaggaaagagggcactgctgtatagtggagtgaaccagctg
gcatgtggcaggcactctggagaagatcgcagcaggaacgccctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctttctggcaccacccctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagaaaaagtacggaatgtggaggaggtagaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcaccct
gctgtagttctgctgttgaggcaggtgcagtgtgaacacctcctcctgtctagtgccggt
actgccctgccagcttctgtcctggagcagctcagcagtgccgtctcagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgacctccacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcccctgcatgtcgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaggccctgctacacttcgccaccaagatgtccgcc
agggagacgaggcgtttgttggagaggctggtgtacttctcctcccaaggttacccagag
actgtggcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacctg
gagctgatggacaccctggtggatgacgccaaagccagtggagacagcagactgctggag
ttccacacacggctcacctcttgctga
DBGET
integrated database retrieval system
