Oncorhynchus tshawytscha (Chinook salmon): 112249821
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Entry
112249821 CDS
T05605
Name
(RefSeq) ryanodine receptor 3-like
KO
K04963
ryanodine receptor 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04020
Calcium signaling pathway
otw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
112249821
04020 Calcium signaling pathway
112249821
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112249821
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Ryanodine receptor
112249821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RYDR_Jsol
RR_TM4-6
RyR
RYDR_ITPR
RIH_assoc
Ion_trans
EF-hand_7
EF-hand_8
EF-hand_1
DUF2478
Motif
Other DBs
NCBI-GeneID:
112249821
NCBI-ProteinID:
XP_042177364
LinkDB
All DBs
Position
LG05:complement(9424492..9525855)
Genome browser
AA seq
3243 aa
AA seq
DB search
MLREGFYNVLMSIHLETAKEARLMMNNEFIIPVTDETRSIKLFPDESKRHSLPGVDLSTS
LKPRLNFSPLSFITTKKQQHLYSPQIPLGILKEKAISMLTEAVQGGGSHIRDPVGGSVEY
QFVPILKLIGTLLIMGVLTSEEVRLILLLIDPNVFGDPEDEEAKVEEVEAAAGGGEKEEV
SSNEVKAVEAGEEETKEVKMSVKGLLEKTLPESVKRQMCELLHYFCDCELKQRIEAIVSF
SDSFVSKLQYNQKFRYNELMLALNMSAAVTAKKTKEFRSPPQEQINILLNFAAGEDCPCP
EEIQEDLYSFHDELRLHCGIPVEEEEEEEDTSIKGRLLAMLYKIKGPPKKLEEEPTEQEQ
AAPTNLKELISQTMASWAQECSIQDPELVRVMFSLLRRQYDGIGALLRAMRKSYTISAVS
VQDCVNLLASLGQIRSLLSVRMGKEEEKLMIDGLGDIMNNKVFYQHPNLMRVLGMHETVM
EVMVNVLGGDKSQEIAFPKMVASCCRFLCYFCRISRQNQKAMFDHLSYLLENSSVGLASP
AMRGSTPLDVAASSVMDNNSLALALEEPDLEKVVTYLAGCGLQSCAMLLAKGYPDIGWNP
IEGERYLSFLRFAVFSNGESVEENSNTVVKLLIRRPECFGPALRGEGGNGLLAAMLEAIK
ISEDPALDLPSTAEGEPTGSGEEEEEEVVHTGNAIMSFYSALIDLLGRCAPEMHLINKGK
GEALRIRAILRSLVPTTDLVGIISIPLKMPIVNKDGSVTEPDMSASFCPDHKAPMVLFLD
RVYGVEDQSFLLHLLEVGFLPDLRASASLDTDVLSTTETALAMNRYIGSALLPLLTRCAG
HFSGTEHYAALIDSTLHTIYRLSKGRSLTKAQRDSIEECLLAICKHLRPSMMQQLLRRLV
FDVPLLTEYCKMPLRLLTEHYEQSWKYYCLPSGLGSSGMASEEELLLTKKLFWGIFDSLS
AKKFDSDLFKTGMACLSATAGALPPDYVDASPGATLEKQASVDAHGNFDPKPINTANISL
PEKLDYIANKFAEHSHVKWSSEKVTAGWKMGESVDDKAKTHPLLKPYKSLSEKERETYRW
PVKESLKSMLAMGWNMERTKEGEAMFIEKQSKISESTQDNDNEFILEPPLDLNNITLSRE
LQGMVEVVAENYHNIWAKKKKTELNSKGGGSHPLLVPYDTLTAKEKYRDREKAQDLFKFL
QINGYIITRDLKDMEQDSSSMEKRFAYTFLKRILKYVDSAQEFIAHLEAMATSGKTDKSP
HDQEIKFFAKVLLPLIDMYFKNHSMYFLSSPSRNLSSSGYASNKEKEMITSLFCKMAALV
RHRISLFGSDSAVMVSCLHILAHSLDTRTVMKSGSEMVKAGVRTLFENAAEDLEKTLEML
KLGKFSQSRSQMKGLTQNITYATTALLPILTALFEHVTMHNFGVYLLVDDVQLSCYRIVT
CLYSLGTGKHIFIERHLPALGECLATLVGAMPVAFLEPDLNAHNPLSVFNTKTPRERAIL
SMPDSVEEMCPEMPRLDRLLKDINDISESGARYTEMPQVIEVILPMLCNYLSYWWERGTE
NSAPHTACCTTVCSNHLSIILGNILKILNNNLGIDDAPWMKRIAVYSQPIICKAAADLLR
SHFLPTLEKLRKKTVKVVAEEELLKADIKGDTQEAELLVLDEFAVLCRDLYAFYPMLIRY
VDNNRSRWLKRPDAQSNELFTMVAEIFILWCKSHNFKREEQNFVVQNEINNLSFLTGESR
TKMSKSGGDQDRKHKKRRGELYSVQTSLIVAALKKMLPIGLNMCTPGDQELISLAKIRYS
LKDTDDEVKDHLRENLHLQDKSDDLAVQWQMNLYKDVVVESEERTDPEQTVDRVQSISAA
VFHLEQVEQPLRLKKCVFQKLLSKQRKRAVVACFRMAPLYNLPRHRSINLFVLGYVRLWI
ETEEYSFEEKLVQDLAKTPMKIVEEEEEEEVEIKPDPLHQLILHFSHNALTERSFLEEDP
LYIAYADMMAKSCAEDEEEEEEEEGKEKTFEEKEMEKQKILYQQARLHARGAAEMVLQMI
SASKGRLGPMVTCTLKLGISILNGGNVLVQQKMLDYLKEKRDAGFFKSLSGLMQSCSVLD
LNAFERQNKAEGLGMVTDEGSSSKVLTNDDFTKDLFRFLQLLCEGHNGDFQNFLRTQTGN
TLTVNIIISTVDYLLRLQESISDFYWYYSGKDIIDEAGQVNFSKALAVAKQIFNSLTEYI
QGPCIGNQQSLAHSRLWDAVVGFLHVFANMQMKLSQDSCQIELLKELMDLQQDMVVMMLS
LLEGNVVNGTIGKQMVDTLVESSSNVEMILKFFDMFLKIKDLTTSDNFREYDPENKGIIS
KKDFQKSMENQKQYTQSEIEFLLSCTEADENDMFNYEEFVERFHEPAKDIGFNVAVLLTN
LSEHMPHDPRLATFLEPAESVLNYFEPYLGRIEIMGGGKRIERVYFEISESSRTQWEKPQ
VKESKRQFIFDVVNEGGESEKMEMFVNFCEDTIFEMQLASQISEPDVVERQEEEEEEVHN
LLEELAEEEENSELEASSAFTMACISAKKKISNFRQMLTFKILKKQFKKTKKLSLKEMTV
GFFSFFWTLFTGFFKGIYSLIFGFFHLIWSSMFGGGLVEGAKNMKVTDILGNMPDPTQFG
IHGDVLEMEKAEVGDSVSGGTDQAIKPSDKAEQDILMQMINPTPKKGEGLKHVDPGLGDV
SETPEPTATVEKKKAVKETKESEPEKADTEKKEKEDKAKEEEPKEEVAQEKPAPKSRNGQ
SKDAPTSFFASFFAGLEIYQAKMLNTLARNFYNMRFLALFVAFAINFILLFYRVTADEDD
SWTSSDDDDDEGGEEYFVLEESTGYMAPTLCFLAVFHTALSVLCLIGYYFLKVPLVVFKR
EKGIARLLEFEGLYITEQPADDDITGQWDRLVINTPSFPNNYWDKFIKRKVINKYGDLYG
AERIAELLGLDKSALDFDPTQETVVEAASLVSWLSSIDTKYHIWKMGVVLTDNSFLYLIW
YATMSILGHYNNFFFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVV
AFNFFRKFYNKSEDEDAPDMKCDDMMTCYLFHLYAGVRAGGGIGDELEDPAGDPYELWRI
LFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGNDYFDTTPHG
FETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGDCFRKQYED
LLG
NT seq
9732 nt
NT seq
+upstream
nt +downstream
nt
atgctgagagagggcttctataatgtacttatgagcatccacctggagacagcgaaagag
gctcgtctgatgatgaacaacgagtttattatccctgtgactgatgagacgcgctccatc
aagctgttccctgacgagtccaagagacactctctacccggggtagacctcagcacctcg
ctgaaaccacgtctcaacttctcccctctctccttcatcacaaccaagaaacagcagcac
ctctacagcccccagatccccctgggcatcctgaaggagaaggccatcagtatgctgact
gaggcggtgcagggaggaggcagtcacatcagagacccagtagggggcagtgtggagtac
cagtttgtccccatcctcaagctgattgggaccctgctcatcatgggggtactcaccagc
gaggaggtgaggctgatcctgcttctcatcgatcccaacgtgttcggggatccagaagat
gaggaggcgaaggtggaggaggtggaggcagcagcaggaggaggagagaaggaggaagtg
agcagcaacgaggtgaaggccgtggaggctggtgaggaggagaccaaggaggtcaaaatg
tctgtgaagggactactggagaagacactgcctgagtctgtcaaacgacagatgtgtgag
ctccttcactacttctgtgactgtgagttgaagcagcgcatcgaggccattgtgtccttc
tcagacagctttgtgtccaagctgcagtacaaccagaagttcaggtacaacgagttgatg
ttggccctcaacatgtctgctgccgtcaccgccaagaagaccaaggagttccgatcccct
cctcaggagcagatcaacatcctgttgaactttgctgctggggaggactgtccctgtcct
gaagagattcaggaagacctctacagcttccatgatgagctgagactacactgtggcatc
ccggtggaggaggaggaggaggaggaagacacgtctataaagggtcgtctgctggccatg
ctctataagatcaagggaccgcccaagaaactagaggaggaacctacagagcaggaacag
gctgctcccaccaacctgaaggagttgatcagccagaccatggctagctgggctcaggag
tgtagcatccaggacccagagctggttcgtgtgatgttcagcctgctgagacgtcagtac
gacggcatcggagcgctgctcagagccatgaggaagagttacaccatctctgctgtgtca
gtacaggactgtgtcaacctcctggcctctctgggccagatcagatcactgctgtctgta
cgcatgggaaaagaagaggagaaactcatgatcgacggactgggtgacatcatgaacaac
aaggtgttctaccagcaccccaacctgatgagggttctggggatgcatgagactgtcatg
gaggtgatggttaacgtgctgggaggagacaagtcacaggagatagcgtttccaaagatg
gttgccagttgctgtcggttcctgtgttacttctgtcgtatcagccgacagaaccagaag
gccatgttcgaccatctgagttatctactggagaacagctccgtcggactagcctcccca
gccatgaggggttccactcccctggacgtagcagcgtcttcagtgatggacaacaacagc
ctggctctcgctctggaggagcctgaccttgagaaggtggtgacctacttggcaggttgt
gggctgcagagctgtgccatgctgctggctaaaggatacccggacattggctggaacccc
atagaaggagagagatatctgtctttcctccgcttcgctgtcttcagcaacggtgagagt
gtggaggagaactctaacacggtggtgaagctgctgatcaggcgtcccgagtgttttggt
cccgctctgaggggagagggtggcaacggcctgctggcggccatgttggaagccattaag
atatcagaggaccctgctctggacctgccctctacagctgaaggagaacctactgggtct
ggtgaggaggaagaggaagaagtggtccataccgggaacgccatcatgtccttctactct
gcactcattgacctgctgggacgctgcgctcctgaaatgcatctgatcaacaagggtaaa
ggcgaggccttgcgtatccgtgccatcctgcgctccctggttcctactacagacctggtt
ggcatcatcagtattccactcaagatgcccatcgtcaataaagacggtagtgtgacagag
ccagacatgtcggctagtttctgtccggaccacaaggccccaatggtgttgttcctggat
cgtgtgtacggcgtggaggaccagagcttcctgctacacctgttggaggtgggcttcctg
cctgacctccgtgcctccgcttccctggacacggatgtgctaagcaccacagagacagct
ctggccatgaacaggtacatcggttcagccctgcttcccctgctgaccaggtgtgctggc
cacttctctggcacggagcactacgcggcgctcatcgactctaccctccacactatctat
cggctgtccaagggccgctccctcaccaaggcccagagagactctatcgaggagtgtctg
cttgccatctgcaaacacctgcgcccttccatgatgcaacagctgctgagacgtctggtg
ttcgatgttcccctgctgacggagtactgcaagatgccactcaggctgctgactgaacac
tatgagcagagctggaagtactactgtcttccctcggggctagggagctccggcatggcc
tcggaggaagaactgttgctcaccaagaaactcttctggggaatattcgactccctctca
gcgaagaagtttgactctgacctgttcaagactggcatggcctgtctgagtgctaccgct
ggggcgttgccacctgactatgtggatgccagccctggtgccaccctggagaagcaggcg
tctgtggatgcacacggcaacttcgaccccaaacccatcaacactgccaatatctccctt
ccagagaaactggactacatcgccaacaagtttgcagagcattcccacgtcaagtggtcc
tcagagaaggtgacagcgggttggaaaatgggagagagtgtggatgacaaggctaaaact
cacccactgctgaagccgtataaatcactcagtgagaaggagagggaaacataccgctgg
ccagtgaaggagtctttaaagagcatgctggcaatgggttggaacatggagaggaccaaa
gagggagaggccatgttcatcgagaaacaaagcaagatctccgagtccactcaggacaac
gataacgaattcatcctggaaccacccttggacctgaacaatattactctatccagagag
ttgcaggggatggtggaggttgtagcagagaactaccacaacatctgggccaagaagaag
aagactgagctgaacagtaaaggaggagggagccacccgttgctggtgccctatgacacc
ctgacagccaaggagaagtacagagacagggagaaggcccaggatctctttaagttcctg
cagatcaatggatatatcatcaccagagacctgaaagacatggagcaggactcgtcgtcc
atggagaagaggtttgcctacacgttcctcaagaggattctgaagtatgtggactcagct
caggagttcattgctcacctggaggccatggccaccagtggaaagacagacaaatcaccc
cacgatcaggaaataaaattctttgctaaggttctgctacctctcatagacatgtacttc
aagaaccacagcatgtacttcctgtcctcgcccagtaggaacctgagcagcagtggctac
gcctctaacaaagagaaggagatgatcactagcctgttctgtaagatggcagctcttgtc
agacacaggatttccctctttgggagcgactcggctgttatggtgagctgtctacacatc
ctggctcattccctggacacaaggacagtgatgaagtcaggctcagagatggtgaaggct
ggggtcaggacgttatttgagaacgcagcggaggacctagagaagaccctggagatgctg
aagctggggaagttcagccagtcccggagccagatgaagggcttgacccagaacatcacc
tacgccaccaccgctctgctgcccatcctcacagccctgttcgaacacgtcaccatgcat
aactttggagtctacctgctggtggatgatgtccagctgtcgtgctatcgcatcgtgacc
tgtctctactcattgggcacggggaaacacatcttcatagagaggcacctaccagcccta
ggggagtgtctggccaccctggtaggagcaatgcctgtagctttcctggagcctgatctc
aatgctcacaaccccctgtctgtcttcaacaccaagacaccgcgagagagggccatcttg
agtatgcctgactctgtggaggagatgtgtccagagatgcctcgtctggatcgcctgctg
aaggacatcaacgacatctcagagtctggagctcgctacacagagatgccacaggtgatt
gaggtgatcctgcccatgttgtgtaactacctgtcctactggtgggagagaggaacagag
aactctgctccacacaccgcctgctgcaccaccgtgtgctccaaccacctcagcatcatc
ctggggaacatcctgaagatcctcaacaacaacctgggcatcgatgacgctccctggatg
aagaggattgcagtctactctcagccaatcatctgcaaggctgctgcggacctactgagg
agtcacttcctgcccactctagagaaactcaggaagaagacagtgaaggtggtggcagag
gaggaactgctgaaggctgacattaaaggagacactcaggaggctgagcttctcgtcctg
gatgagtttgctgtcctctgtagagacctgtacgccttctacccaatgctcatccgctat
gtggacaacaacagatccagatggttgaagaggcctgatgctcagtccaacgagctcttc
accatggtggctgagatcttcatcctctggtgcaaatcacacaacttcaaaagggaagag
cagaactttgtggttcagaatgaaatcaacaacctgtctttcctgactggagaaagtaga
accaagatgtccaagtcaggtggtgaccaggataggaagcacaagaagcggcgtggagag
ttgtactctgtccagacctctctgatcgtagccgcactgaagaagatgctgcccatcgga
ctcaacatgtgcaccccaggagaccaggagctcatctcattggccaagataagatacagt
ctgaaagacaccgacgatgaggtgaaggatcacttgcgtgagaaccttcatcttcaggac
aagtctgatgacctggcagtgcagtggcagatgaacctgtataaggatgtggtggtggaa
agtgaggaacgtacagacccagaacaaactgtggacagagtacagagcatctctgctgca
gtcttccacctggagcaggtggagcagcctctgaggttgaagaagtgtgtgtttcagaag
ctactgtccaaacagcggaaacgcgccgtggtggcctgcttccgtatggctcctctctac
aacctccccaggcatcgttctattaacctcttcgtgttgggctatgtgagactatggata
gagacagaggagtactcctttgaggagaagctagtgcaggacctggcaaaaaccccaatg
aagatcgtggaggaggaggaagaggaggaggttgagattaagccagaccctcttcatcag
cttatccttcacttcagccacaacgccctgacagagagaagtttcttggaagaagatccg
ctgtatattgcatatgcagacatgatggcaaagagttgtgcagaggatgaagaggaggaa
gaggaggaagaggggaaagagaagacatttgaggaaaaggaaatggagaagcagaagatc
ttgtaccagcaggccagactacacgcccgcggggctgctgagatggtgctacagatgatc
agcgccagtaaaggtcgactaggtcctatggtgacctgtaccctcaaactgggcatctcc
atcctcaacggaggcaacgtgctggtccagcagaaaatgctggattacctgaaagagaaa
agagacgcaggctttttcaagagtctgtcaggcctcatgcagtcctgcagtgtcctggac
ttgaatgcctttgagagacagaacaaagcggaaggtctggggatggtgacagatgaaggc
tccagttccaaagttctgacgaatgatgacttcaccaaagatctcttccggtttttgcaa
ctgctctgtgaggggcacaatggggatttccaaaacttcctgagaacacaaacaggaaac
acgttgacagtcaacattatcatcagcacagtggactacctgctacgccttcaggaatct
atcagtgacttctactggtattattctgggaaagacattatcgacgaggcagggcaggtc
aacttctccaaagccttagctgtcgcgaagcagatcttcaactcgctcactgagtacatc
caggggccatgtattgggaaccagcagagtctggcccacagcagactgtgggatgcagtg
gtgggattcctgcatgtgtttgccaacatgcagatgaagctgtcccaggactcgtgtcag
attgagctgctcaaggagttgatggatcttcagcaggacatggtggtgatgatgctgtca
ctgctcgagggcaacgtggtgaatggaacgattggaaagcagatggtggacactctggtg
gagtcctccagcaacgtcgagatgatcctcaagttcttcgacatgttcctcaagatcaag
gacctgaccacctctgacaacttcagggagtacgaccccgagaacaaggggatcatctcc
aaaaaagatttccagaagtccatggagaaccagaagcagtacacccagtcggagattgag
ttcctcctctcctgcaccgaggccgacgaaaacgacatgttcaactacgaggagtttgtg
gagcggttccacgagccggccaaagacatcggcttcaacgtagccgtgctgctcaccaac
ctctctgagcacatgcctcatgacccccgtctggccaccttcctggaaccagctgagagc
gtgctgaactacttcgagccgtacctgggccgcatcgagatcatgggcggagggaagcgc
atcgagagggtctactttgagatcagcgagtccagtcgtacacaatgggagaagccacag
gtcaaagagtccaagagacagttcatctttgatgtggtcaacgaggggggagaaagcgag
aagatggagatgtttgtgaacttctgcgaagatacaatctttgagatgcagctggcgtct
cagatctcggagcccgacgtggtggagcgccaggaagaggaagaggaggaggtgcacaac
ttgttagaagagcttgcagaggaagaggagaatagcgagctggaggcttcctcggctttc
accatggcctgcatctccgccaagaagaagatctccaacttcagacagatgctgaccttc
aagatcctcaagaagcagttcaagaagaccaagaagctgagcttgaaggagatgaccgtt
gggttcttctccttcttctggacgctcttcacagggttcttcaaggggatctacagcctc
atcttcggattcttccacctcatctggtcgtccatgttcggaggcgggctcgtcgaagga
gccaagaacatgaaggtgacagacatcttgggtaacatgcccgaccccacccagtttggt
atccacggcgatgtgttggagatggagaaggccgaggttggtgattctgtgtcgggcggg
acagaccaggccatcaaaccgtcagacaaggcagagcaggacattttaatgcagatgatt
aatcccacaccaaagaaaggggaagggttaaaacacgttgatcctggactgggagacgtc
tctgagactcctgagcccaccgccactgtggagaagaagaaggctgttaaagaaactaaa
gagtcggaaccagagaaagcagacacagagaagaaggagaaggaagacaaggccaaggag
gaggagcctaaagaggaagtggctcaggagaagcccgcccccaagtccagaaacggccaa
tcaaaggatgctcctacttccttctttgccagcttctttgctgggctggagatctaccag
gccaagatgctgaacacgttggctcggaacttctacaacatgcgtttcctggctctgttt
gtggcgtttgccatcaacttcattctactgttctacagggtgactgctgatgaggatgac
tcctggactagttctgatgatgatgatgatgaaggtggtgaggagtactttgtcctggag
gagagtacaggctacatggctcctacactgtgtttccttgctgtgttccacactgccctc
tctgtcctctgtttgattggctactactttctcaaggtgcctctggtggtgtttaagcga
gagaaagggatcgccaggctcttggagtttgaaggtctctacatcacggagcagccggca
gacgatgacatcacaggacagtgggaccgcctcgtcatcaacacaccgtccttccccaat
aattactgggacaagtttatcaaacgaaaggtcattaataagtatggagacctgtacgga
gctgagcggatagctgagctgttgggtctggataagagcgccctggacttcgaccctact
caggagaccgtggtggaggcggcttctcttgtatcctggttgagctctatcgacaccaag
taccacatctggaaaatgggagtggtgctgactgacaactcgttcctgtacctgatctgg
tacgccaccatgtccatcctggggcactataacaacttcttcttcgctgcccatctgctg
gacatcgccatgggcttcaagaccctccggaccatcctgtcctccgtcactcacaacgga
aaacagttggtgctgaccgtaggtctgttggcggtggtggtgtatctgtacactgtggtg
gccttcaacttcttcaggaagttctacaacaagagcgaggacgaggacgcacctgatatg
aagtgtgacgacatgatgacttgctatctgttccacctgtacgcgggggtgagggccggc
ggtggtatcggtgatgagctcgaggacccggccggagacccctacgagctgtggcgtatc
ctcttcgacatcaccttcttcttcttcgtcatcgtcatcctcctggccatcatccagggt
ttgattattgatgcgtttggggaactgagagaccagcaggagcaggtgaaggaggatatg
gagacgaaatgcttcatctgtggaattggaaatgactactttgacacgacaccccacggc
tttgagacccacaccttacaagagcacaacctggccaactacctcttcttcctgatgtac
ctcatcaacaaggacgagactgaacacacgggtcaggagtcgtatgtgtggaagatgtac
caggagagatgctgggacttcttccctgctggggactgtttcaggaagcagtatgaggac
ctgcttgggtag
DBGET
integrated database retrieval system
