Oncorhynchus tshawytscha (Chinook salmon): 112250009
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Entry
112250009 CDS
T05605
Symbol
crnkl1
Name
(RefSeq) crooked neck-like protein 1
KO
K12869
crooked neck
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112250009 (crnkl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112250009 (crnkl1)
03036 Chromosome and associated proteins [BR:
otw03036
]
112250009 (crnkl1)
Spliceosome [BR:
otw03041
]
Complex B
Other components
Prp19-related factors
112250009 (crnkl1)
Complex C
112250009 (crnkl1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
112250009 (crnkl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
HAT
TPR_14
Suf
TPR_19
TPR_CcmH_CycH
TPR_16
U3_assoc_6
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
112250009
NCBI-ProteinID:
XP_024275566
LinkDB
All DBs
Position
LG05:15963865..15970963
Genome browser
AA seq
785 aa
AA seq
DB search
MASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPKQKITDEEELND
YKLKKRKGFEDNIRKNRTVISNWIKYAQWEESLKEVQRARSIYERALDVDHRNIALWLKY
AEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYSYMEEMLGNIAGCRQVFERWTEWEPE
EQAWHSYINFELRYKEVDKARSIYERFVIVHPDVKNWIKYARFEEKHGYIAHGRKVFERS
VEFFGEEHVDENLFVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKFYTVFEKKF
GDRRGIEDVIVSKRRFQYEEEVKASPHNYDAWFDYLRLVESDADPDTAREVYERAIANIP
PIQEKRHWRRYIYLWINYALYEELEVKDPERTRQVYLACLDLIPHKKFTFAKMWLLYGQF
EIRQKNLQAARQGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFASENCTT
WIKFSELETILGDTERARAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRL
LQRTQHVKVWISYAQYELSIDTSDRLQRCRGIFEEANKGLRSCEEKEERLMLLESWKEFE
QEFGSDTTRERVKKLLPEKVKKRRKLTAEDGSDAGWEEYYDYIFPEDAANQPNLKLLAMA
KMWKRQQQEEEDDEEDDEEDEEENNGEVDRGKVEEVRGKEMEGEENGRGERGIDKEMTED
LASPSSEKPIVSEPVPEKVPKESTYDDRDDSDESSSGSSSSSSSSSDNDGGEKQPRKSNK
DSVKD
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcatctactgcggcagggaaacagaggataccgaaagtagcgaaggtgaaaaacaaa
gctcctgcagaggtacaaatcacagctgagcagttgctcagggaggcaaaggagagggag
ctcgagcttctgccaccgccacccaagcaaaagatcactgatgaagaggagttgaacgat
tacaagttgaagaagaggaagggatttgaagacaacatcagaaagaaccgtactgttatc
agcaactggataaaatacgctcaatgggaggagagcctgaaagaagtccagagggctcgc
tctatttacgagcgtgctctggatgtagaccaccgaaatatagctctgtggctgaagtat
gccgagatggagatgaagaaccggcaggtgaaccacgcccgcaacatctgggacagagcc
atcaccatcttgccccgtgtcaaccagttctggtacaagtacagttacatggaagagatg
ctgggcaacatcgctggctgcagacaggtgtttgagcgctggacagagtgggaaccagag
gaacaagcctggcactcctacatcaactttgagctgcgctacaaggaagtcgacaaggcc
cgctccatctatgagagatttgtgattgtccaccctgatgtgaagaattggattaagtac
gcccgttttgaagagaagcatggctacatcgcccatggaaggaaggtgtttgaaagatca
gtggagttctttggtgaggagcatgttgatgagaacctctttgtggccttcgccagattt
gaagagaaacagaaagagtttgagagagttcgagtcatctacaaatacgccctggacaga
attcccaagcagcaggctcaggagcttttcaagttctacaccgtgtttgagaagaagttt
ggagaccggaggggaatcgaggacgtcatcgtcagcaagaggagatttcagtatgaagag
gaagtcaaggcaagcccacacaattatgacgcatggtttgattacctacgtctggtggag
agtgacgcggatcctgacactgccagggaggtctatgagagagccatcgccaatatccct
cctatacaggagaagaggcactggagaagatacatttacctgtggataaactacgctcta
tatgaagaactggaggtcaaggacccagagagaacaaggcaggtgtacctggcatgtctg
gatctcatccctcacaaaaagttcacgtttgccaagatgtggctactctacggacagttt
gaaatccgccagaagaacctccaagctgctagacaaggcttgggcacagccattggtaaa
tgtccaaagaacaagctgtttaagggctacattgaactggagctgcagctcagagagttt
gaccgatgtaggaagctttatgagaagtacctggagtttgcctccgagaactgcaccacc
tggatcaagttctctgagctggagaccatcctgggagacacagagagagcccgggccatc
ttcgagctggccatcggacagccacgactggacatgccagaggtgttgtggaagtcctac
atcgactttgaaattgagcaggaagagtatgacaacaccagaggtctctacaagagactt
ttgcagcgcacacagcacgtaaaggtctggatcagctatgcccagtatgagctgtccata
gatacctctgaccggctgcagaggtgtagggggatctttgaggaggccaacaagggcctg
aggagctgtgaggagaaggaggagcgcctgatgctgctggagtcttggaaggagtttgag
caggagtttggctcagacacaaccagggaaagggtgaagaaactgctgccggagaaggtg
aagaagaggagaaagctcacggcagaggacgggtcagatgcagggtgggaggagtactac
gactacatcttccctgaggatgcagcgaaccagcccaacctcaagctgctcgccatggcc
aagatgtggaagaggcagcaacaagaagaagaagacgacgaagaggacgacgaagaggat
gaggaagaaaacaatggagaagtggataggggtaaagtggaggaagttaggggcaaagaa
atggaaggagaagaaaacggaagaggggagagaggaatagacaaagaaatgacagaagat
ttagcatcaccatcatcagaaaagcctatagtcagtgagcctgtgcctgaaaaagtcccc
aaggagagcacatatgatgaccgagatgattctgatgaaagcagtagtggaagcagcagc
agcagcagcagtagtagtgacaatgatggtggtgagaaacagccaaggaagagcaataag
gactcagtgaaagattag
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