Oncorhynchus tshawytscha (Chinook salmon): 112252588
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Entry
112252588 CDS
T05605
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112252588 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112252588 (cnot1)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112252588 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112252588 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
112252588
NCBI-ProteinID:
XP_024279698
LinkDB
All DBs
Position
LG06:44177796..44195626
Genome browser
AA seq
2424 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGINQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DFPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPLHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAQAQAQSQPPKAPQPGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFR
PQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLE
EQLSAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPT
PQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIK
IAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFA
AALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHAR
QEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGF
LAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSR
DGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRC
LIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDE
RSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMH
SGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDD
LITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEA
TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINF
QTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHN
KGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF
AEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKL
FQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgttcactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gctgaccttggcattaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttttgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagccttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatgggatccccctacagtccatctctgctcccggcagtggcatttggagt
gatggaaaggacaagagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctacgagctcgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggtatggaggtgttccctgtcgacctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gacttcccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccatcaaacactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcctggcacaccctgcgccacgagctc
atctccaccctcatgcccatcttcctgggcaaccaccccaactccgccatcatcttgcac
tatgcgtggcacggacagggccagtccccctctatccgccagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcatctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagcccttcatccaggcatgtgtaacgttc
ctgaagaggcgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaa
agcgcccagctccccccggaaacgatggctaccatgctgggctgtctgcagtcctgtgcc
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagcagcctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcgctgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccgtttggggggattggaagcctc
tcttcacagctaggtaacacaggtccgctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagtgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagagtaagatgaaggcctctgacttatctcaggtgtggcccgaggct
aaccagcactttagtaaggagattgacgatgaggctaacagttacttccagcgcatctac
aaccaccctccgcaccccaccatgtctgtggatgaggtgctggagatgttgcagaggttc
aaggactccaccatcaagcgagagcgggaggtctttaactgtatgctgaggaacttgttt
gaggagtaccgcttcttcccccagtaccccgacaaggagctgcacatcactgcctgcctg
ttcggggggatcattgagaagggtcttgtcacctacatggcccttggactggccctcaga
tatgtccttgaagccttaaggaagccatttggatccaaaatgtattactttggaatcgct
gctctagatagattcaaaaataggctgaaggactatccccaatattgtcagcacttggcc
tcgatcggccactttctgcaattcccccttcatttgcaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgga
agcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccccagcctgga
cagcccagcaccctggtcaccacagctaccgccaccaccactgtcgccaaaaccactacc
atcacccgacctacccctggcagcttcaagaaggatgtgccgccttccatcaacaccaca
aacattgacactctgctagtagcaacagaccaaactgagaggattgtggaacccccagag
aatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgacacag
aaggtcgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtttcccagtat
ctggtcatgaagagggtcagcattgagcccaacttccacagcctatattccaactttcta
gacaccctgaagaaccctgagtttgtcaaaatggtcctgaatgaaacttacagaaacatc
aaggttctccttacctctgataaggcagctgcaaacttttctgatcgatccctactgaag
aatttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacg
gatttggaggtgaaatccctcttgttggaagcctatgtcaaggggcagcaggagctactc
tatgtggtcccgtttgtggccaaagtcctggaatccagtttgcgtagcgtgatcttccga
cctcagaatccctggaccatggccatcatgaatgttctggcagagttgcatacggaacat
gatctaaagctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactggac
atcaacgacctgaagcctggcaccctgctgaaagacaaagacaagttgaagagtctggag
gagcagctctctgcaccaaagaaagaggccaagccccctgaagaaatgatccctattgtt
agcacaggtatccagcactttcaaactgggatgccccttgtcggagactttcttccattt
gcagctgcaccatccactcctgccccaaccaccacttgctcagctactgggccccctacc
ccgcagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatc
aatatcaacatcaacatccccttgcttcaagcccaccctcagctcaagcagtgtgtgaga
cagtccattgagcgggccgtgcaagagcttgtccaccctgtagtggaccgctccatcaag
atcgccatgaccacctgcgagcagatcgtcaggaaggactttgctctggactcggaggag
tcgcgcatgcgtgtggcagctcatcatatgatgcgcaacctgaccgccggcatggcaatg
atcacctgccgggagcccctgctcatgagcatcgccaccaacctgaagaacagctttgcc
gctgccctcagggcccccaccccccagcagagagagatgatggaggaagctgctgccagg
gttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcagtggagaag
gctggcccagagatggacaagaggctggcgacggagtttgagctgaggaagcatgcccgt
caggagggccgtcgctactgtgaccccgttgtgctgacctaccaggctgagcgcatgcca
gagcagatcagactcaaggttggaggcgtagaccccaaacagctggcggtgtatgaggag
tttgctcggaatgttccaggcttcctacccagcaatgacctgtctcagcccacaggattc
cttgcccagcccatgaagcaacaggcatgggccacggacgacgtggctcagatctatgac
aagtgcatggcagacctggagcagcacctccacgccatccctccagcgctggccatgaac
cctcagacccaggctttgcgcagcctactggaggctgtggccctagccaggaactcccgg
gacggcattgccgctctgggcctgctgcagaaggctgtggagggtctgctggatgctacc
agtggtgccgatgctgacttgcttctgcggtacagagagtgccacctgctggtgctcaaa
gccctccaggacggccgggcatacgggccactgtggtgcaacaagcagattaccaggtgc
ctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggagctgctgatcaga
aaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatggagaatggg
ctgcactacatggcggtggcgtttgccatgcagctggtgaagctgctgttggtggatgag
cgcagtgtgagccacattactgaggcagacttgttccacactatcgagactctgatgcga
accagcgcccactccagggccaacgcacctgaggggcttcctcagctgatggacgtggtc
cgttccaactacgaggccatgatcgaccgggcccacggaggacccaactttatgatgcac
tctggcatctcccaggcatccgagtacgacgacccgccgggcctgagggagaaggctgag
tacctgctgagggaatgggtcaacctgtaccactctgcagccgccggccgggacagcacc
aaggccttctctgcctttgtgggccagatgcaccagcagggcattctgaagaccgatgac
ctgatcactcgtttcttccggctgtgcacggagatgtgtgtggagatcagctaccgtgcc
caggccgagcagcagcacaaccccgcggccagcgccgccatcatcagggccaagtgttac
cataacctggatgcctttgtgcgcctcattgccctgctggtcaagcactccggagaggcc
accaacactgtcaccaagatcaacctgctcaacaaggttctaggaattgtggttggagtg
ttgatccaggaccatgatgtgagacagactgagttccagcagttgccttaccaccgcatc
ttcatcatgctgttgcttgagctcaatgcccccgagcacgtgctggagaccatcaacttc
cagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccctggc
tttgtttacgcttggctggagttgatctctcaccgtatcttcatcgccaggatgctggcg
cacaccccacagcagaagggttggcccatgtatgcccaacttctcattgatctgttcaag
tacctggcgcccttcctgaggaatgttgagcttaacaaacctatgcaaatcctctacaag
ggtaccctgcgtgtccttctggtcctactgcatgacttcccagagttcctgtgtgactac
cactacggcttctgcgacgtcatcccacccaactgcatccagctccgcaacctgattctg
agtgccttcccacgcaacatgaggcttccagaccccttcactcccaatctgaaggttgac
atgctcagcgagatcaacatcgcaccgcgcatcctcacaaacttcactggagtgatgccc
tctcagttcaagaaggatctggactcgtacctgaagacacgctcccccgtcaccttcctc
tctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttg
cagcacaacgacacatctttagaacaggtgtcaaatgagccaggcaaccgttacaacatc
cagctgatcaacgctctggtgctgtatgtgggaacccaggccatcgcacacatccacaac
aagggcagcaccccctccatgagcaccatcactcactcagcccacatggacatcttccag
aacctggctgtggacctggacactgaggggcgttatctcttcctgaatgccattgccaat
cagctgcgctacccaaacagccacacccattacttcagctgcaccatgctgtacctgttt
gctgaggccaacactgaggcaatccaggagcagattaccagggttcttctggagaggctg
attgtgaacaggcctcatccctggggactgctcatcaccttcatcgagctcatcaagaat
cccgccttcaagttctggagccacgactttgtacactgtgccccggagatcgagaagttg
ttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggc
actggtgccagttag
DBGET
integrated database retrieval system
