Oncorhynchus tshawytscha (Chinook salmon): 112256009
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Entry
112256009 CDS
T05605
Symbol
uvssa
Name
(RefSeq) UV-stimulated scaffold protein A isoform X1
KO
K23720
UV-stimulated scaffold protein A
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112256009 (uvssa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112256009 (uvssa)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
112256009 (uvssa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
DUF1195
LBD_receptor
INTS1_R4
Motif
Other DBs
NCBI-GeneID:
112256009
NCBI-ProteinID:
XP_024284695
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Position
LG08:71467155..71498370
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AA seq
733 aa
AA seq
DB search
MDHAQRDKLSELVEELTTSGEPQLNPNKLKEVKKICKVSNDYIEHFYHLTMTQLAQEHAE
IRLSAFQMVSELFTRSHHFRVLLVDNFQEFLDLTVETDSDEPLPPPKEVARKLKTIAIKT
VQEWQATYGEAYKKLALGYHFLKQVKKVDFHDVQARTLAERKREEERQKRLERIYKDKVE
KATKEMEDASEEIEECLTEINNCIKLLLPAEFDLSDLDTSTPANNSTVSVSSVPNEKAST
SSDLDEQPCCSKDLELQREPKNPETRTATKTNEEKEEEDPSDEDSDIEDVLVEDAFIRNT
GLISHKYSLDLNLSTDLKLKETEENEALVNTMKDLHKLLSTKHLPVVQYWVQVFTKAGVP
EPLLKRAIDLKSSLERALQKHEDLHIDYKARHRRVMKAPEGSDDDDDDFEEVPEKEGFEP
HIPDHLREEYGLEPSPSTSVACKKPVQPTVKCPATGASHTLSRPRKRATDEEQDPTCAAA
TLRLFKQRLLPQPPSTSSAAGGHVDPTYQASEDRDKAPVIPFGLDLYYWGEEQPTAGKII
KNSSQHQFWVPNEVEEEVENKELAAQMKSRYITFAGRFQPVKHRCKTPMSNGGLCERQDR
VKCPFHGPIIPRDELGKPTNPEDAVRLEKEEWKRREDQHDWRDPELMRDIELATGEDLGS
SKTFGKGKKGKGKGKKKKYPNLSDLKKGVNTSRSRLEKKVFNPSSMRRVTDVMNKMDKLK
HAKFANQFNYALN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggaccacgcacaacgagataagttgtcagagcttgtggaagagttgaccacatctggg
gaaccacaactaaatccaaataaactgaaggaagtgaaaaagatatgcaaagtttccaat
gactacattgagcacttctaccacctgaccatgacgcagctggcccaggagcatgccgag
atccgcctgtcagccttccagatggtcagtgaactcttcacccgctcacaccacttcagg
gtcctgctggtggacaacttccaggagtttctggacctgacagtggagacggactcagat
gagcctctgccaccacccaaagaggtggcccgaaagctgaagaccattgccatcaaaact
gtgcaagaatggcaggccacttatggagaagcctataagaaactggccttggggtaccac
tttctcaagcaggttaaaaaggtggactttcatgatgttcaggccagaacactagctgag
aggaaacgagaggaggagagacagaaaagactggagaggatttataaagacaaagttgaa
aaggccaccaaggaaatggaagatgcctcagaagagattgaagagtgtcttacagagata
aacaactgcataaagttgcttctgcctgcagagtttgacctcagtgacctagatacctca
actccagccaataattcaaccgtttctgtctcttctgtgcctaatgagaaggctagcacc
tccagtgacctagacgaacagccctgttgtagtaaagacctggagctccagagggaaccc
aagaatccagagacaagaacagcaacgaaaaccaatgaggagaaggaggaagaggatcct
agtgatgaagacagcgatatagaggatgttctggtagaagatgcattcatacgcaacaca
ggactcatatctcacaaatacagcctggacctgaacctctccacagatttaaagctaaag
gagacagaggaaaatgaagcattggtgaacaccatgaaggacctgcacaaactgctcagc
actaaacacctgcctgtcgtccagtactgggttcaggttttcaccaaggcgggtgtgcca
gaaccgctcctcaaacgtgccatagacttgaagtcgtcgctggagagagctctgcagaaa
catgaagacctgcacattgactacaaggccaggcatcgcagagtgatgaaagcgccggag
ggcagcgatgacgacgatgatgactttgaggaggttccggagaaggagggttttgaaccc
cacattccagaccatctacgggaggagtacggtttagagccgtccccctctacctctgtg
gcctgtaagaagccggtgcagcctacagtgaagtgtcctgcaacaggagcctctcacacc
ctctccagacccaggaagagagccactgacgaggagcaggaccccacctgtgcagccgcc
acactccgcctcttcaagcagcgcctcctaccccagccacctagcaccagctctgcagca
ggaggtcatgtggaccccacataccaggctagtgaggacagggacaaagctccagtcatc
cccttcggtttggacctctactactggggagaggagcaacccactgcaggcaaaatcatc
aagaatagctcccagcaccagttctgggttcccaacgaggtagaggaagaggtggagaat
aaggagctggctgcccagatgaagtccaggtacatcacgttcgctggccgcttccagccc
gtcaagcacaggtgcaaaacccccatgtccaacggaggcctctgtgaacgccaggaccga
gtcaagtgtcctttccatgggccgatcatcccacgagacgagctgggaaaacccaccaac
cctgaggacgctgtgcggctggagaaagaggaatggaaacgtagagaggaccagcatgac
tggcgggaccctgagctgatgagggacatagagcttgccactggggaggacctggggtcc
tccaaaacctttgggaagggcaagaaaggcaaggggaagggcaagaagaagaagtacccc
aacctcagtgatctgaagaagggtgttaacacttcacgctccagactagagaagaaggtt
ttcaacccgagctccatgaggcgagtgacagacgtcatgaataaaatggacaaattgaaa
cacgcaaagtttgcaaaccaatttaattatgcactgaattaa
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