Oncorhynchus tshawytscha (Chinook salmon): 112256387
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Entry
112256387 CDS
T05605
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112256387
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112256387
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Motif
Other DBs
NCBI-GeneID:
112256387
NCBI-ProteinID:
XP_024285374
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All DBs
Position
LG08:complement(48737296..48814902)
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AA seq
1108 aa
AA seq
DB search
MYAREMDFIQIIWIVILCWTGVDSVINLKYSINEEQKAGYIIGNVTKDAQTQGFAIAPRA
PYLRVISNSEPRWVELSPAGLLLTHQKIDRDVACRQTAKCTVSLEVMSNSMEICVIKVEI
VDLNDNAPRFPTNHIDIEISENASPGTRFPLEGASDPDSGIFGVQSYSITPNELFGLEIK
TRGDGSKIAELVVQKSLDRETQSHYSYEISAEDGGDPPKIGAVQLNVKVIDSNDNNPVFD
QPVYTVNVMENSPINTLVIDLNATDPDEGTNGEVVYSFNSYVTEKTRDVFKIDPRTGIIT
VNGPLDYEVTHIYEIDVQAKDLGPNSIPAHCKVTVNVMDANDNPPVISLLSVNTELIEVS
ENAPRGYVIALVRVSDKDAGANGKVQCRLQGNVPFRLQEYESFSTILVDGRLDREQRDTY
NLTIQAEDSGTPPLRATKSFVVKVTDENDNPPHFLKPHYQEMVLENNLPGSCLLAVSAVD
PDLGMNGTVSYTIVPSEIKHMDVNTYVSINPSGRIYSMRSFDHEYTRTFDFKVLARDQGN
PSLSSNATVRIVVLDVNDNTPVMTTPTLVNGTAEVSIPRNAGVGYLVTQVKADDYDEGEN
GRLTYSISEGDRLFFEIDQVNGEVRSTKMFGEQVKSTYEITVVARDHGKPSLSASAYIVV
YLSPDLNAQESIGPVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCSFFYL
RRVAEYSYGSQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQSL
PLGCRRSESTFINVDNQNSRNAAPNHGSYQQHSFASGQGPQQPDLIINGMPLPETDNYID
SSYVNSRAHLIKSTSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGHYIDTAVNDVLNMTV
PPNVCQLPDQGRRKDSSEGFHCQDECRILGHSDRCWMPRVPGPARGKSPEHGHPRNNVIA
LSIEATTVDVPHYEDCGTGTIKRTFATFGKDGPEDPERGELKGNKRTMMEAYSPKANGGA
VREAGNGREAASPITSPVHLKSPLAKAPSGYNTLKCRDAERIANHSMLRQPEGKDSEPAV
REINTLLHDSVHLEKESPSSKRLKDIVL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccagggagatggattttatacaaattatttggatagttattttatgctggact
ggggttgattctgttattaatttgaaatactcgataaacgaagagcagaaagctgggtat
atcattggaaacgtgacaaaggacgcacaaacgcaaggatttgccattgcaccgcgagcg
ccgtacttgcgggtcatctcgaattcagagccgcgatgggtggaactcagccctgctgga
cttctcctcacacatcagaaaatagaccgggacgtggcttgccgacagacggcaaagtgc
actgtctctctggaggtgatgtcaaactctatggagatatgtgtcattaaagttgaaata
gtggatttgaacgataatgcgcccagattccccacaaaccacattgacattgaaatctca
gagaacgcctcccctggtaccaggttccccctagagggggcaagcgatccggactcgggg
atcttcggtgtgcaatcatattcgatcaccccgaatgagctcttcgggctggagattaag
actaggggggacgggtccaagattgccgagctcgtagttcaaaaatctttagatcgggag
actcagtctcactattcatacgaaatcagtgcagaagacggtggagaccccccaaagatt
ggcgcagtccagctcaatgttaaagtaatagattcaaatgataataatccagtttttgac
cagcctgtgtatacagtgaacgtgatggagaattctcctattaatacacttgtaattgac
ttgaatgcaacggaccctgacgagggaactaatggtgaggttgtgtactcgtttaacagt
tacgtcaccgagaaaacgagagacgtatttaaaattgaccctagaaccggtattatcact
gtaaatggccctttggattatgaagtaacccatatttacgagattgatgtccaagccaaa
gatttaggtcccaattctattccggctcattgtaaagtcactgtcaatgtgatggatgcg
aacgataacccacctgtcattagtttattgtcggtgaacacggagctgattgaagttagt
gagaacgcgcctcgtggatacgttattgcattagtgagggtctcagacaaggacgcgggc
gcgaatggtaaggtgcagtgtagactacaaggcaacgttcctttcaggctccaggaatac
gagagcttctcaaccatccttgttgatggcaggctagacagagagcagagggacacgtac
aatctaactatccaagcagaggacagtggtaccccccctttacgcgccactaaatcgttt
gtagtgaaagtcacagatgaaaatgataaccctccccactttctaaaaccacattaccaa
gagatggtcctagaaaacaaccttcctggctcatgtttgctggctgtgtcagctgtagat
cctgatttgggcatgaatggcacagtttcatacaccatcgtgcccagtgagattaaacac
atggacgtaaacacatatgtcagcataaatccttcagggcgtatttattccatgagatca
ttcgaccacgagtacactagaacatttgacttcaaagttttggccagggaccaggggaat
ccgtccttgtccagtaacgcgacggtgcgcattgtcgttttggatgtgaatgacaataca
cctgttatgaccactccaaccctggtaaatggcaccgcggaggtatccattccaagaaat
gcaggagtgggttacctggtgacccaagtcaaggccgacgactatgacgagggggagaat
ggaaggctgacctattccatctcggagggggacaggcttttctttgagatagaccaagtg
aatggagaggtgcggtccaccaagatgttcggagagcaggtcaagtcgacatacgagatc
acagtggtggcacgcgaccacgggaaaccgtcgttgtcggcctcggcatacattgtagtt
tacctctcaccggacctgaacgctcaggaatctattggacccgtaaacctgtcgttgatc
ttcatcattgccctgggctctattgctgctatcctgtttgtcactatgatttttgtggca
gtaaagtgcaaaagggataacaaggagatccgaacgtacaactgcagtttcttctacttg
cgcagggtggcggagtactcatatggcagccagaagaagtcgagcaagaagaagaagctg
agcaagaacgacatccgcctcgtgccgcgcgacgtggaggagacggacaagatgaacgtg
gtgagttgctcatctctcacctcctccctcaactacttcgactaccaccagcagagcctg
ccgctgggctgcaggcgctccgagagcaccttcatcaacgtggacaaccagaactcacgc
aatgctgcacccaaccacggcagttatcagcagcactccttcgccagcgggcagggcccc
cagcagcctgacctcatcatcaacggcatgccgctgcctgagacggataattatatcgac
tccagctatgtgaacagccgagcacatcttatcaaaagcacatcaacattcaaggacctg
gagggcaatagtctgaaggacagcgggcacgaagagagcgaccagacggacagtgagcac
gatgtccagagaggccactacatagacacggctgtcaacgacgtgctcaacatgaccgta
ccccccaacgtctgccagctgcctgaccaaggtaggagaaaagactcaagcgaaggcttc
cactgccaggacgagtgtcgcatcctgggccattcggaccgctgctggatgccccgtgtg
cccggcccagcccgtggcaagtctcctgagcatggccacccacgtaataacgtcattgcc
ctgtccatcgaggccaccaccgtggatgtgccccactacgaggactgcggcaccggcacc
atcaaacggacttttgccaccttcggcaaggacggcccagaggacccagagcggggcgag
ctaaagggcaacaagcggacaatgatggaggcatacagccccaaggccaacggcggcgcc
gtgcgcgaggcaggcaacgggcgcgaggcagccagccccatcacctcccctgtgcacctg
aaaagcccgctggccaaggcgccatccggctacaacacgctcaagtgtcgcgacgctgag
cgcatcgccaaccacagcatgctgcgacagcccgagggaaaggacagcgagccggccgtc
cgggagatcaacacgctcctccacgacagcgtccatcttgagaaggagtctcccagcagc
aagcgcctgaaggacattgtgctctaa
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