Oncorhynchus tshawytscha (Chinook salmon): 112263743
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Entry
112263743 CDS
T05605
Name
(RefSeq) stereocilin isoform X2
KO
K24636
stereocilin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112263743
Cilium and associated proteins [BR:
otw03037
]
Other cilia and associated proteins
Stereociliary proteins
112263743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Stereocilin
ANTAR
DUF4261
Motif
Other DBs
NCBI-GeneID:
112263743
NCBI-ProteinID:
XP_024296064
LinkDB
All DBs
Position
LG04:65402303..65414504
Genome browser
AA seq
1853 aa
AA seq
DB search
MAVFRVMRIALLVVLLGNTSTKSSASTKEDQREPIFKELVSILHKGGWYPSKESASPERT
QDQQVHSVLRSIMGSLKTLGLLPSKSMGLPSLQKPVDRHRLSGFLYNISMYLQEMGAEME
ERQLISDEEQLWEKVLQSFIQSEGGTALSQWDSREPPRPSVRLQDWFLSLRGSPHLDGLL
GLLQSLMSLSERQSHRPLLDFLSQNWRTVSALLEVALQALVSGTYGQASAGLQGFICALR
GHSECAFSVSWLTQFLRFIETRNWKPMVNLHPAGMGADQRGGSAAFERLKPFSMPPKVLR
EEGLSGNATQGNVGDRRDMGGDLDSLHTLLLQALSRSDGGQRAGQLAEQNPALLQGLDGL
RRGFLHRVGSSVYGNLRRKVSRVTMALLDDVSSVVDVPQPKHKGRCAVGDLRQLILWGIR
HNITWNAQALGFNSQGPPSTPSFLSCPSIEGERGDPRPPPRPSRPRPALSPRRVPKQKHP
PSSTPLPRRSRLLKPQSEAVEVGHSHLREMGYFASAEILEAACNASIPGLTGVSNFTVFL
YCNLFDGDDGSVDPEVGQVGPDLHATCSDAAWYLSAAEDDFLWVHVCSEFFTHQFNNTVC
ANSSFWMQRAHQAADMKDYHYFNQSSIGDLCVQLSGEVVEGRGSPGPDEACLAQLGTRSL
SAQDFRRCFLPNISALVSALCGSDSPEAHPSYTSLPEGSWAAEYCSRLHNSSHPESIEDT
CNYRKWSLQHFTNATLLELCGSTEGLREYVCSNATLYRRLLSAYPQLSDLCVDLDVEQED
RKCFLQWFFDMLPAPYDFDTSQLCVSPAPLLVEALQRLSVCEVDGGERGSWVGAVGYVLR
VLDFVVGLSAGLDEGEGEVRQGLGQAILLSSLLDNASFWATLRPDASLSVLQTVGLFLRM
EQSAALKEDLLSCFSPVLWDLIEREDNSSALRVLMQEYLQMPRESIRTLVMSAEKDAVKR
FLSHMHQSWDQLHVETTQSSQRELQAMETMTSAFIHKFPRVTPDLFVDLSQFIPFMSVSD
IMSFPTSLMVNTSVLMAIRDHSTEMKSPQKQAFVKRLLQSSVVGDVPSWPPYFLSSILPL
LPHLPVSQFQQLTSDQLSPLVEFLGNTSLDGTRGRHVLRTLFIKKRNFTSDNISRLGVLV
CYLKPEELRPFLLAAPVSSALWQQLALCVSEGLISASGRLSLWLVQAVRPLNASTLPPPA
LATLRGLLPQLGASFLQSLPSLQLLDLLTQPGLPSFSPAQAFQILSKISQDTNLTMDTLC
RLKPLLPGLSPAVLRGIHWSEISGTTHCECWSTLLPDLKPAHRAMLHRALQEALASNSRN
FTAQLQCLLPFAPLRELIEVLDGETFLRDMSLYRDLPWSPQQAQLLFKRTHQSEIITRDT
VQDLGHIAGGMSCDWLKLWTNETDFSELLQFVSELPGGVRPALRKCVVEELRQRPEEDLD
GISPWFAAELPVNLIESLSNTSLTAVLAHIQQHFVDFLKLPRHKQMALAEKTITVLGNSQ
GLAEGELRGASVDLLGPLLPFLDRDTLGLVDRGDLGLRLDELRGYCLPWDTLKDMAALLT
GRDLLGEASAWTVGDVELVGRLLFTLSPKQINSIPLVVLSADTVEEVLAGQWRWENSDVG
QVCASQCVDQHGQRERIHSLIRGVVRAQSRRRKVPVPSCGDIRGTFPSAWTANQLSRMAG
EELRQCTEVIGQDASLSPDRRRALWVKLRQAYSPVRGLRPEQVLGLGCLVTELGERELQD
TNLTDLGVLAYLGALTDWSPKKDESSSCWCDAEAEVEGGAARSCRSGFSRTPALWFHTVR
DQQTGPLQPQHGCSVSEGAGPAVFRAANGGSDRPSLQSSGLWPRQYLGPRGLH
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgtttagggtcatgcgcatcgcattgttggttgttttactgggaaatacatca
accaagagttcagcaagtacaaaagaggaccaaagagagcccattttcaaggagttagta
tcaatattgcataaaggagggtggtatcctagcaaagagtctgcctccccggagagaacc
caagaccagcaggtccacagcgtgttgaggagcatcatgggaagtctgaagaccctgggc
ctcctgcccagtaagagcatgggcctcccctccctccagaagcctgtggacaggcaccgt
ctgtcaggtttcctctacaatatctccatgtacctccaggagatgggtgctgagatggag
gagcgacagctcatctctgacgaggaacaactgtgggagaaggtattgcagtcctttatc
cagtcagaggggggcactgcgctgagccagtgggacagccgggagccccccaggcccagc
gtcagactccaggactggttcctgtccctgagaggcagccctcacttggacgggctactg
gggcttctgcagagccttatgtccctgtctgagcggcaatcccacaggcccctgcttgac
ttcctgtcccagaactggaggacagtgagtgctctgctggaggtggccctgcaggcgctg
gtcagcgggacctatggccaggccagcgccgggctgcagggcttcatctgtgccctgagg
ggccacagtgaatgtgccttcagtgtcagctggctaacacagttcctccgcttcatagag
acacgcaactggaagcccatggtgaacctgcaccctgcggggatgggggccgatcagaga
gggggctcggctgcttttgagcgcctgaaacctttcagcatgccccccaaggtcctgaga
gaggaagggttgtctgggaatgccactcaaggcaacgttggggacagaagggacatgggg
ggagacctggactcccttcatacactgctcctgcaggctttatcacgctccgatgggggg
cagagggcggggcagctggcagagcaaaaccctgccctgctgcagggtttggacggcctc
agaaggggattcttgcacagggtgggcagctcagtgtacggcaacctgaggagaaaggtg
tcccgtgttaccatggcgctgcttgatgatgtcagcagcgtggtggacgtgccacagccc
aaacataagggcagatgcgccgtaggtgacctgagacagctaatcttatgggggatcaga
cataatatcacgtggaatgctcaggctctgggcttcaactcgcagggccctcccagcacc
ccatccttcctctcctgcccctccatagagggtgagagaggggaccccagacccccacca
cgcccctctcgccctagaccagccctgtcaccccgcagggtgcccaaacagaaacatcca
cccagctcaaccccattaccccgccgttcccgtctcctcaagccccagtctgaggcagta
gaagttggccacagccacctgagagagatggggtactttgcctcagcagagatcctggaa
gcagcgtgtaacgcctctatcccaggcctaacaggtgtgtccaacttcactgtgttcctc
tactgtaacctgtttgacggggacgatgggtctgtggacccggaggtgggtcaggtggga
cccgacctacacgccacatgttctgatgctgcctggtacctgtctgcagccgaggatgac
ttcttgtgggtccacgtctgcagcgagttcttcacccaccagttcaacaacactgtgtgc
gccaactcctccttttggatgcagagagcacaccaggctgcagacatgaaggactaccac
tacttcaaccagtccagtataggtgacctgtgtgtgcagctgtcaggggaggtggtggag
ggcagaggcagcccagggcctgacgaagcctgcctggcccagctgggcaccaggtccctc
agcgcccaggacttcagacgctgcttcctgcccaacatttctgctctggtctcagccctg
tgtggcagcgattcccctgaagcccatccctcctacacatcccttccggagggcagctgg
gctgcagagtactgctccaggctccacaactcctcccaccctgaatccatagaagacaca
tgtaactacaggaagtggagcctgcagcatttcaccaacgccaccctactggagctctgt
ggcagtacagaggggctgagggagtatgtttgtagcaatgccaccctctaccgccgtcta
ctctcagcctatcctcagctctctgacctttgcgttgacttggatgtagaacaagaggac
aggaagtgtttcctccagtggttctttgacatgctcccggcgccgtacgactttgacaca
tcacagctgtgtgtgagtcctgctccgctgctggtggaggcactgcagaggctgagtgtg
tgtgaggtggatgggggtgagcgaggaagctgggtgggggctgtggggtacgtgctgagg
gtactggactttgtggtggggctctcggcagggctggatgagggggagggggaggtgagg
cagggcctgggtcaggccatcctcctctccagtctccttgacaacgcctcattctgggcg
actctgcgtcccgacgcctcactgagcgtgctccaaaccgtgggcttgttcttgcgcatg
gagcagagcgcagctctcaaagaggacctgctcagctgcttcagtcctgtattatgggac
ctcattgagcgagaggacaactcctctgccctcagagtcctaatgcaggagtacctccaa
atgcccagggagagtatccgcacactggtgatgtcagcagagaaagatgcagtgaagagg
tttctgtctcacatgcaccagagctgggaccagctgcacgtagagaccactcagtcctct
cagagagaactgcaggccatggagaccatgacgtctgccttcatccacaagttccctcgt
gtgacccctgacctcttcgtcgacctatcacagtttatacctttcatgtctgtctctgac
atcatgagcttccccacctccctgatggtcaacaccagcgtgttgatggcgatccgtgac
cacagcacagagatgaagtctccacagaaacaggcgtttgtgaagaggctcctgcagtcc
agtgtggtgggagatgtcccttcctggccaccgtacttcctcagctccatcctcccactg
ctcccacacctcccagtcagccaatttcagcagctgacatcagaccagctgagtcccctg
gtggagtttctgggaaacactagtctggatggaacaaggggtcgtcatgttctacggact
ctattcattaaaaaaaggaacttcaccagtgataacatatcgaggctgggagttctggtt
tgttacctgaaaccagaggagctgcgtccgtttctgctggctgcccctgtgtcctctgct
ctttggcagcagctagctctctgtgtgtctgagggactcatcagtgcttcaggcaggctg
tctctctggctggtccaggcggtgcggcctctgaacgccagcactctacctcctccagca
ctggccaccctcaggggcctactgccccagctaggggcttccttcctgcagtcactgccc
tcactacagctcttggacctgctaacacaaccaggtctgcccagcttctccccagcacag
gctttccagatattatctaaaatttcacaagacacaaatctcaccatggatacactgtgc
aggctgaagcccttactgcctggcctgtcccctgctgtgctcagaggcatacactggtct
gagatcagtggaaccactcactgcgaatgctggagcactctactgcctgacctgaagcct
gcccatagagccatgctccacagggcactgcaggaggctttagccagcaactcaaggaac
ttcacagcgcagctccaatgtctcctgccgtttgcgcccctgagggagctgatagaggtt
ctggatggagagacattcctgagagatatgagcctgtacagagacctgccctggtccccc
caacaggctcagctccttttcaagaggacccatcaatctgaaatcattaccagagacact
gtacaggacttgggtcatattgctggtggaatgagctgtgattggctaaagctttggacc
aatgaaactgatttttcagagttgcttcagtttgtcagtgagttgccaggaggggtgaga
ccagctctgaggaaatgcgttgtagaggaactgcggcaaagaccagaggaagacctggat
ggtataagcccctggtttgctgcagaattaccggtgaacctgattgagagcctgtctaat
acttcactgacagccgtcctggctcacattcagcagcactttgtggacttcctcaagctg
ccccgtcataagcagatggccttagcagaaaagaccatcactgtgctgggcaactctcag
ggcctggccgagggggagctcaggggggcctctgtggacctcctggggcccctgttgccc
ttcctggacagggacaccctggggctggtggacagaggggacctggggctgcggctggat
gagctgagggggtactgcctgccctgggacaccctgaaggacatggctgctctgcttact
gggagagacctgctgggagaggcatcggcctggacggttggtgatgtggagcttgttggc
agactgttatttactctctctccaaaacagatcaactccatcccactggtggtgctaagt
gcagacacggtggaggaggttctggcaggtcagtggcgctgggagaacagtgatgtgggt
caggtctgtgcgtcccagtgtgtggaccagcatggccagagagagaggatccacagcctc
atacgaggggtcgtcagagcacagagcaggaggagaaaagtgccagtcccaagctgtggt
gacataagaggcaccttcccctcagcatggacagccaatcagctgagccggatggcgggg
gaggagttgaggcagtgcacagaggtcataggtcaggacgcttcactgagccctgaccgg
cgcagagcactgtgggtaaagctcaggcaggcctacagtccagttagaggcctgaggcca
gagcaggtcctggggctgggctgtctggtcactgagctgggggagagggagctccaggac
actaacctgactgacctgggtgtcctggcctacctgggggctctgaccgactggagccca
aaaaaagatgagagcagcagttgttggtgtgatgcggaagcggaagttgaaggtggagca
gctcggagctgtagaagtggcttctctaggacacctgctctgtggtttcacactgtcaga
gatcaacagactggacccctacaacctcagcatggctgctctgtttctgagggagctggc
cctgccgtgttcagagcagcaaatggaggctctgaccgcccgtctctccagtcctcaggc
ctttggccccgtcagtacctggggcccagaggtcttcactga
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