Oncorhynchus tshawytscha (Chinook salmon): 112264190
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Entry
112264190 CDS
T05605
Symbol
hcn4
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112264190 (hcn4)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
112264190 (hcn4)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
LPD1
Motif
Other DBs
NCBI-GeneID:
112264190
NCBI-ProteinID:
XP_042186827
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All DBs
Position
LG12:63995214..64081289
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AA seq
1334 aa
AA seq
DB search
MDRLHSSMRKRLYSLPQHIGQKAYIMGEGEDGDKDTRRKSIRMKPLPSPTSRGSIKGIGE
ARSGDTVIMETDFGRPTKTSLNGDCRRFRGSFSSITSRHVHDSDSAEQRRLITEGDVTPS
EESPPGAIGGGADQGAQGASAGGAGGAQHASLDQESGFIKLDGIDQISPDDERLYQAGFI
HRQFGAMLQPGVNKFSLRMFGSEKAVEREQERVKSAGFWIIHPYSDFRFYWDLTMLLLMV
GNLIVIPVGITFFKDEHTPPWIIFNVISDTFFLMDLVLNFRTGIVKEDNTEIILDPQQIK
IKYLRSWFVVDFISSIPVDYIFLIVETRIDSDFYKTARALRIVRFTKILSLLRLLRLSRL
IRYIHQWEEIFHMTYDLASAMVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFPQDCWVSKN
KMVNDTWGQQYSYALFKAMSHMLCIGYGMYPPVGMTDVWLTILSMIVGATCYAMFVGHAT
ALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQRIHDYYEHRYQGKMFDEESILGELN
EPLREEIVNFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF
IQHGVVSVLTKGNKETKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLE
EYPMMRRAFETVALDRLDRIGKKNSLLQHKVQHDLSSGVLNYQENEIIQQIVQHDRDMAT
CAHLLQNIPPPQPPSPGHTPVIWAPLIQAPLQAAAATTSVAIALTHHPHLPHLPAALFRP
PVTVLGSRNLQDPPTGRLKKFHTSAPTSSMGPDSPSSTPSKLHCSGMDTALLASFRAHHT
TQGSGAASSSQQASSSSGTQPGSTGAFPFGPFSSSGGSPSHSTAQSTAQLHSQPQTQQPF
RCTTPPLAALFQQGVMEGAVGTEMGGATGGATGWSSGGTTGGEIGGVAEGATGGTIRRAT
GWGRRGSIEGYTTGVHIGGATGGYSGGASGGHIRGTSGGHIGATGGAMGGHIGGAMGGAM
GGATGGMTIGVLGTSSSGCSISPQSTGSSGNINPCQLLHSQLPPKPPQVGSLQQFAGGGR
TPSGFYHLPPPGSPSSSSTQQAPEGSPSPLAQFSLAGLQSGLVPQLSLERSALASLAQYG
SANGSPCYTPLGPSPTVQSPVTGRTFHYSDSSSATGSHSSLLMPQTSLPSQQHAAGSESL
LGLGSFSEDMKLLSCSNISLPQDVTQAMGYSSLPRSSPPRTSPPRSSPPRTSPPCSSMEP
GYCFSSPYTSPILVPKPCSSVPGHMTPPVPAQMSPGHLQHQTQSPVASPALPPRKGSAAH
SELEPVRSKLTSNL
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggacaggttgcactcctccatgcgtaaaaggctctacagtttgccacagcatattgga
cagaaagcttatattatgggcgaaggagaagacggcgacaaggacacccggaggaagagt
attaggatgaaacccttgccgtcaccaacctccagaggaagcatcaaaggcatcggggag
gccagaagtggagacacggtgatcatggagacagactttgggagaccaacgaagaccagt
ttaaacggagattgtcggagatttcgtggcagtttctcctccatcaccagtcggcatgtg
cacgactcagactcggcggagcagaggcgcctcatcacggaaggggacgtcaccccgagc
gaggagagcccccccggagctattggcggtggggcggaccaaggtgcgcaaggcgccagc
gctggtggtgctggtggtgcccaacatgcttctcttgaccaggaatcagggttcataaag
ttggatggcattgatcaaatttcgccggacgacgagagattgtaccaggcaggattcata
cacaggcagtttggggcaatgctgcaaccgggggtcaacaagttctccctgaggatgttt
gggagcgaaaaggcggtggaacgggaacaagagcgggttaaatccgccggattttggata
attcacccgtacagtgatttcaggttctactgggacctgaccatgctgctgctgatggtg
gggaacctgatcgtcatcccggtgggcatcaccttcttcaaagacgaacacacgcccccc
tggatcatcttcaacgtgatctcagacaccttcttcctcatggacctggtgctcaacttc
cgcacgggcatcgtcaaggaggacaacaccgagatcatcctggacccacaacagatcaag
atcaagtacctgaggagctggttcgtggtggacttcatctcctccatacctgtggactac
atcttcctcatcgtggagacgcgcatcgactcagacttctacaagacggcccgggcgctg
aggatcgtccgcttcaccaagatcctcagcctgctcagactgctcaggctgtccaggctc
atccgatacatccaccagtgggaggagatcttccatatgacctatgacctagccagtgcc
atggtgcgtatcgtcaacctgattggtatgatgctgctgctgtgccactgggacggatgt
ctgcagttcctggttcccatgctgcaggacttcccccaggactgctgggtgtccaaaaac
aaaatggtgaacgacacatggggccagcagtactcctacgccctgttcaaagccatgagc
cacatgctgtgtatcgggtacggcatgtacccacctgtgggcatgacggacgtgtggctc
accatcctcagcatgatcgtgggcgccacctgctatgccatgttcgtgggtcatgccacc
gcactcatccagtctctggactcctcccgtcggcagtaccaggagaagtacaaacaggtg
gagcagtacatgtccttccacaagctgccggctgatatgaggcagaggatccatgactac
tacgagcatcgctaccaaggcaagatgtttgacgaggagagcatcctgggagaactcaac
gagccactcagagaggaaatcgttaactttaactgtcgaaagctggtggcttccatgcca
ctgtttgccaacgcggaccccaactttgtgacctccatgctgaccaagctgcgcttcgag
gtgttccagcccggagactacatcatcagagagggcaccatcggcaagaagatgtacttc
atccagcacggagtggtcagcgttctcaccaagggcaacaaggaaaccaagctgtcagat
ggatcctacttcggggagatctgtctgttgacgcggggtagaagaacagccagcgtcaga
gcagacacctactgccgtctgtactctctgtctgtggacaacttcaacgaggtcctggaa
gagtaccccatgatgagacgggccttcgagaccgtggctctggaccggctggaccgcata
gggaagaagaactccctcctgcagcacaaggtgcagcacgacctgagctccggcgttctc
aactaccaggagaacgagatcatccagcagattgtgcagcatgacagagacatggccacc
tgcgcccacctcctgcagaacattcctccgcctcagcccccgtctccggggcacaccccc
gtcatctgggctcccctcatccaggcacccctgcaggctgctgccgccaccacctctgtt
gccatcgccttgacgcaccacccccaccttccccacctcccagccgcgctcttccgcccg
ccggtcacggtcctgggctccaggaacctccaggatcctccaaccggccggctgaagaag
ttccacacgtcagcgcccacctcctccatgggacctgactccccctccagcaccccatct
aaactgcactgctctgggatggacacagccctgctggcctccttccgggcccaccacacg
actcaggggtcaggggcagccagctccagtcagcaggcgtccagcagcagtggaactcag
cctgggtctaccggggcctttccctttggacctttctcctcctccgggggctctccctcc
cacagcacggcacagagcacggcccagctacactcacagccccagacgcagcagccattc
cgctgcaccaccccgcctctcgctgccctcttccagcagggagtcatggagggagccgtg
gggacagagatgggtggagcaacagggggagctacaggttggtcttcaggaggcactacc
ggaggtgaaataggaggggttgctgagggggccacgggtgggacaataagaagggccact
ggttggggtagacgtgggtctatagaaggatatactactggagtacatataggaggagcc
actggggggtactcaggaggggctagtggtgggcacattagaggaactagtggaggacat
ataggagctactggtggagcaatgggagggcatataggaggggcaatgggaggggcaatg
ggaggggctacaggtggaatgacaattggagttctgggtacctctagttctggttgtagt
atcagcccccagtccactggttcatccggcaacattaacccctgtcagctgctccacagc
cagctgccccccaagcctccacaggtgggctccctgcagcagtttgccggcgggggtagg
actcctagtgggttctaccacctcccccctccaggctccccatcctcctcctccacccag
caggccccagagggctccccttctcccctggcccagttcagcctggcaggcctccagtct
ggcctggtccctcagctgtccctggagaggtctgccctggcctcgttggcccagtacggc
tcagctaacggctcgccctgctacacccccctggggcctagccccacggtccaaagccca
gtcacaggaaggactttccactacagtgactcatccagtgccacagggtcccacagctct
ctgctcatgccccagacctccctccccagccagcagcacgcagccggcagtgagtctctg
ctggggctgggcagcttctctgaggatatgaaactattgtcctgttctaacatctccctg
ccccaggatgtgacccaggccatgggatactcctccctcccacgctcctcaccccctcgc
acctcgcccccacgctcctcaccccctcgcacctcgcccccatgctcctccatggagcca
ggatactgcttctcctcgccctacacctcccccatcctagttccaaaaccctgtagctcg
gtgccagggcacatgactcctcctgtccctgcccagatgtctccaggacacctgcaacac
cagactcagtcccccgtggcctccccggccctgccgccacggaaaggctcggcagcccac
tctgaactagaacctgtccgctccaaactaacctccaatttgtga
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