Oligella ureolytica: I6G29_07070
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Entry
I6G29_07070 CDS
T07321
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
oue
Oligella ureolytica
Pathway
oue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6G29_07070 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oue03021
]
I6G29_07070 (rpoB)
03400 DNA repair and recombination proteins [BR:
oue03400
]
I6G29_07070 (rpoB)
Enzymes [BR:
oue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6G29_07070 (rpoB)
Transcription machinery [BR:
oue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6G29_07070 (rpoB)
DNA repair and recombination proteins [BR:
oue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6G29_07070 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
QPT38979
UniProt:
A0A378XF86
LinkDB
All DBs
Position
complement(1422925..1427040)
Genome browser
AA seq
1371 aa
AA seq
DB search
MPYSYTERKRIRKSFAKREDIQKVPNLLGTQLNSYDLFLQQNVHHSQRKDEGLHAAFTGI
FPIESNNGYARLEFESYRLEAPVFDVKECHLRGLTYGSQLYATINLVIMDRDASKPTVKE
VRKQEVFMGEVPLMTDTGSFVINGTERVIVSQLHRSPGVFFEHDRGKNQSSGKLLFSARV
IPYRGSWLDFEFDAKDNLYFRIDRRRKMPVTTLLKAIGMTAEQILAEFFDFDSFDIKDSG
ALLEFFPDRWRGEIAPFDLVDKAGNVLVEKDKRINARHLRQFAEANMEQILVNDEFLVGR
FLATNIIDPETGEVLAEANAEITEAMLTALRAAGIKTINTLYINELEKGPYISTTLSTDD
TVDENAARIAIYRMMRPGEPPTEEAVEALFQRLFYSEDSYDLSRVGRMKVNSRLHGTDSS
EGALTLTNDDILKTIKLLVDLRNGKGEIDDIDHLGNRRVRCVGELAENQFRAGLIRVERA
VKDRLGSAESDNLMPNDLINSKPISAAVKEFFGSNQLSQFMDQTNPLSEVTHKRRVSALG
QGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNHYGFLETPYRKV
VNCQVTNEIEYLSAIKEANYVIAQANAELDDDHRFTDDLIACRENGETIMTAPENVQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLKPEKPLVGTGLERIVATDSGT
AVQAKRGGVVDHVDAQRIVIRVNDDEAAAGEVGVDIYNLTKYTRSNQNTNINQRTIVKRG
DIVAAGDVLADGASTDLGELALGQNMLIAFMPWHGYNFEDSILISEKVVSEDRYTSIHIE
ELTVVARQTKLGDESITRDISNVPELQLNRLDDSGIIHIGAEVRTDDILVGKVTPKSETP
LTPEERLLRQIFGEKAADVKDTSLRVPSGMNGTVIDVQVLTAKGEKPDARAQSIIDAELN
RYRIDLDDRFRIAQNDIFERLQKILVGQVVNGGPKGLKKGDELTNEYLENLDPSYWFDIR
LADEDTQTTLEHAKESIDFERAEIERMYDEKRKKLTQGDELPPGVIKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSHIVPIEDMPYMADGTPVDIVLNPLGVPSRMNIGQVLEVHLGWAA
KGIGHRVSEMLENERSSQIKDIREYLEKVYNDVGKKEQLDSLSDDEVIDMAKNLREGLPL
ATPVFDGAVEEEIQHMLKLAYPDELKERLGLTESRTQVNLIDGRTGELFDRPVTVGYMHY
LKLHHLVDDKMHARSIGPYSLVTQQPLGGRAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDIAGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLALNMELEGKK
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtatacagaacgtaaacgtattcgtaagagcttcgctaagcgcgaagat
attcaaaaagtaccaaaccttctaggaacacagctcaattcatatgatttgtttttgcag
caaaatgtccaccatagccaacgcaaggatgaaggtttacatgccgcttttacaggcatt
ttcccaattgaaagcaataacggttacgctcgtttagagtttgaaagttatcgcttagaa
gcccccgtatttgacgtaaaggaatgtcatttacgtggcttgacctatggctctcaatta
tacgccacgattaacctagtgatcatggatcgtgatgctagtaagcctacggtaaaagaa
gtcagaaagcaagaagtctttatgggtgaagtgcccctaatgacagataccggttcattt
gttattaatggtaccgaacgtgtcatcgtgtctcagttacaccgttcacccggtgtgttc
tttgagcatgaccgcggtaaaaaccaaagttccggtaaattattattctctgcccgtgtt
atcccataccgtggttcatggttagactttgagtttgacgccaaggataatttatatttc
cgtattgaccggcgtcgtaaaatgccggtcactaccttattaaaagccatcggcatgacg
gctgagcagattcttgctgagttctttgattttgacagtttcgatatcaaagatagtggt
gcgcttttagagtttttcccggatcgttggagaggtgaaatcgctccttttgatttggtt
gataaagccggtaatgtcttagttgaaaaagataagcgtattaatgcaagacatttgcgt
cagttcgccgaagctaacatggagcaaatccttgttaacgatgagtttttagtcggccgt
ttcttggcgaccaacatcattgatcctgaaacaggtgaagtgctcgccgaagctaacgca
gaaatcactgaggctatgctgactgctttacgcgcagccggaatcaagacgattaatacc
ctttacatcaacgaattagaaaagggtccatacatctctacgaccttaagtacagatgat
accgtcgatgaaaatgcagcacgtattgcgatctatcgtatgatgcgtcctggtgagccg
ccaaccgaagaagcggttgaggctttattccaacgtcttttctacagtgaagatagctac
gacttgtcacgcgtaggccgtatgaaagttaatagccgtctacatggcacagatagttct
gaaggcgcgctaacactaactaacgacgatattctaaaaacaattaagttgttggttgac
ttacgtaacggtaagggcgagattgacgatattgaccacttaggtaatcgccgtgtgcgc
tgtgttggtgagttagctgaaaaccaattccgtgccggtttgatccgtgttgagcgtgct
gttaaagatcgcttaggctctgctgaatctgacaacttgatgccaaacgatctgattaac
tccaagcctatttctgctgcggttaaagagttctttggttctaaccagctgtcacagttt
atggaccaaactaacccgttatcagaagtgacgcataagcgtcgtgtttctgcgttaggt
cagggtggtttgactcgtgagcgcgccggctttgaggtacgagacgtacacccgacgcac
tatggtcgcgtatgcccgattgagacgccggaaggtccaaacattggtttaattaactca
atggctctgtatgcgcgtttgaaccactatggtttcctggaaacgccatatcgtaaggtt
gtaaattgccaagttaccaatgaaattgagtacttatcagccattaaagaagctaattat
gtgatcgctcaagcaaacgctgagttagatgacgatcatcgatttactgacgatctgatt
gcgtgtcgtgaaaatggcgagaccatcatgactgcacctgaaaatgttcagtatatggac
gtagctccatcacagattgtatcggttgctgcttcattaattccgttcttagagcatgat
gatgcgaaccgtgccttgatgggtgcgaacatgcaacgtcaggcagtaccttgcttgaaa
cctgagaaaccgttagtaggtacgggtcttgagcgtattgttgcgactgactccggtacc
gcagtacaagccaaacgtggcggtgtagttgatcacgtcgatgctcagcgtattgttatt
cgagttaatgacgatgaggctgcagcgggtgaagtgggtgtagatatttataacctaact
aaatacactcgttctaaccaaaacacgaatattaaccagcgcacgattgttaagcgcggc
gatattgtggctgccggtgatgtattggctgatggcgcgtcaacagacttaggtgaatta
gccttaggtcaaaatatgctgatcgctttcatgccgtggcatggttataactttgaggac
tcgattctaatctcagaaaaagtagtttcagaggatcgttatacctccattcatattgaa
gagctaaccgttgttgcacgtcagactaagctgggtgatgaatcgattactcgcgatatt
tctaacgtaccggaacttcagttaaaccgtctagatgactcagggattatccacattggt
gccgaggtacgtaccgatgatattttagtgggtaaggttacaccgaagtctgagactcct
ttaacaccggaagagcgtttattacgtcagattttcggtgaaaaagcagcggatgttaaa
gacacctctttacgcgttccgtccggtatgaacggtacggtaattgatgtacaggttctg
actgctaaaggtgaaaagcctgatgctcgtgcacagtcgattattgatgctgagttaaat
cgctatcgtattgacttggatgaccgtttccgtattgcccaaaacgatattttcgaacgt
ctacagaaaatcttagttggtcaggttgttaatggtggtcctaagggcttaaagaaaggt
gatgagttaactaatgaatatttagaaaacttagatcctagctactggttcgatatccgt
ttagcagacgaagatactcaaacaacgcttgagcatgcgaaagagtctattgattttgag
cgtgctgaaattgagcgtatgtatgatgagaagcgtaagaagctgactcaaggtgatgag
ttacctccgggcgttattaagatggttaaggtttacttagctgttaaacgtcgcttgcag
cccggtgataagatggctggtcgtcacggtaataagggtgttgtttcccacattgtaccg
attgaagatatgccatacatggcagacggtacgccggttgatatcgtattgaacccgcta
ggtgttccttctcgtatgaacatcggtcaggtactggaggttcatttaggttgggccgct
aaaggtattggtcaccgtgtgagcgaaatgcttgaaaacgagcgtagttctcaaataaaa
gacattcgcgagtatttggaaaaggtctacaacgacgttggaaaaaaagagcaattagac
agtttgtcagatgacgaagtgatcgacatggctaaaaacctacgcgaaggtctgccatta
gctacgccggtatttgacggtgcggttgaagaagaaattcagcatatgctgaaattagct
tatccggatgagttgaaagagcgtctaggtcttactgaatctcgtacacaggttaactta
attgatggccgtacgggtgagttatttgaccgtcctgtgacggtaggttatatgcactat
ctgaaactccaccatttagtggacgataagatgcatgcccgttctattggtccatactca
cttgtcactcaacaaccattgggcggtcgagctcaatttggtggtcagcgtttcggtgag
atggaggtgtgggcacttgaggcgtatggtgcagcttacacgctacaagaaatgttaacc
gttaaatcggatgatattgctggtcgtacgaaggtttacgagaacatcgttaagggtgag
cattcaatcgatgctggtatgcctgagtcctttaacgtcttagttaaagaaattcgatca
ctagctcttaacatggagctggagggtaaaaagtaa
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