Opisthorchis viverrini (Southeast Asian liver fluke): T265_09689
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Entry
T265_09689 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
T265_09689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ovi03041
]
T265_09689
Spliceosome [BR:
ovi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
T265_09689
Complex C
U5 SnRNP specific factors
T265_09689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
RVT_1
GTP_EFTU_D2
EFG_III
DUF6451
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
20323857
NCBI-ProteinID:
XP_009174108
UniProt:
A0A074Z9D6
LinkDB
All DBs
Position
Unknown
AA seq
1279 aa
AA seq
DB search
MDTDLYDEFGNYVGPDLMSDEEEPADDGSLPDEQGSDDEMDEERMEPQHNLDDAQEESLA
ALYANSRGRVKVYGKLSPEFTTSSGVRQGCPLSPFLFNFVIDTIMEDSLPASNACGVEVL
PGPPLTDIEYADDIALLGSDPVALQTILNNLNNSASRFGMRFTPAKCKVLLQDWVGSNPS
LMLADEPIEVVDKFVYLGSCISPGGLAKDEISIRIGKARAAFANLRHLWRRRDISFSVKG
RVYNAAVRSILLYGSETWPLRAEDVKRLSVFDHRCLRSIARIWWEHRISNSEVRRMVFGR
NNSPSIDELITLHRLRWLGHVLRMPVDRLPRRVLFAQPREGWKRSRGGQTMTWQRSMKAI
TSKLSCAALKGMLFTFATLLPQVVLHEDKKYYPSALEVYGPDVETLVQEEDAQPLTQPLV
EPVRHKKFAYTEASIPRTTYDPEFLADLMDCPDLIRNVVLCGHLHHGKTSFVDCLMEQTH
PDISAKGDKDLRYTDFLHMEVERGLSVKSTPVTLVLQNMREKAYLFNIFDTPGHVNFSDE
VTAAFRLADGVCLVVDVSEGVLLNTERVLKHALQERLPVTLCINKIDRLILELKLPPTDA
YYKIKHIIDEVNSILLTFSETTGDMGDSQPLVSPLLGNVCFASSYYRFCFTLDSFAKLYA
DTFAPGMDPDELAKRLWGDIYFNSKSRKFSKRPPANNSQRTFVEFILEPLYKIFAQTVGD
VDTCLPSLCTELGIWLSKSEMKMNVRPLLRIIFKRFFGDFSGFVHMCVTHIPSPVSAAPV
KVSSCYTGPLDSQLARDMLKCNMDVKQVMVHTTKLYPDPEAITFHVYGRVMSGTLHAGQD
VRVLGENYSLTDEEDSRHATVGRLWVSVARYRLEVNRVPAGNWVLIEGVDHPIVKTATLT
SLDAKGACIFRPLNFNTLSVVKIAVEPANPSELPKLLDGLRKVNKSYPLLATKVEESGER
IIRGTGELYLDCVMHDLRKLYSDIEVKVADPVVAFCETVVETSSLKCFAETPNKKNKLTM
IAEPLDKGLAEDIESKAVQIDWPKKRLGEFFQKKYDWDLLASRSIWAFGPDATGPNILVD
DTLPSEVDKTLLGTVKDYIVQGFQWGTREGPLCDEPIRNVKFKMLDALISGEPHQRGSGQ
IIPTARRVAYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTHDAPISGSP
LYVIRAFLPVMDSFGFETDLRTHSQGQAFCLLVFNHWQMVPGDPLDRSIQIQPLVPQPAT
HLAREFMIKTRRRKVLVLD
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggatactgatttgtatgacgaattcggaaattatgtaggcccggacttgatgtcagac
gaggaggagcctgctgatgatggcagtttacccgatgagcaaggttcggatgatgaaatg
gatgaagagcgaatggagccgcaacataatctggacgacgcacaggaagaaagtcttgct
gcgctgtacgccaactcccgcggccgtgtaaaggtctacgggaagctctctcctgagttc
accacatcaagtggtgtccgacagggttgtcctctttcacctttcctctttaacttcgtc
attgatacgatcatggaagactcactaccagcctctaatgcctgtggggtcgaagtgctc
cctgggcctccgctcacagacatcgagtacgcagacgacatagctcttctaggatctgac
cccgtggcattgcaaacaatactaaataatctaaataattctgcctcgcggtttggtatg
cgcttcacacctgcaaagtgtaaagtgctactgcaagactgggtgggctcgaaccctagc
ctcatgcttgcggatgaaccgattgaggtagtagacaaatttgtttacctgggcagctgt
atcagtcccggtggtctcgcgaaagatgaaatttccatccggattgggaaggccagagca
gcttttgcgaacctacgtcacctgtggcgtaggcgtgacatcagcttctctgtcaagggt
cgagtttacaatgctgcggtgcgctccatattactatatggatcagaaacctggccgctg
cgcgccgaggacgtcaaaagactttcagtgtttgaccatcgatgtcttcggagcattgcc
cgaatctggtgggaacaccggatcagcaattctgaagtacgtcgaatggtattcgggaga
aataactcaccctcgatagatgaactgatcacactgcataggttgcgctggcttggccac
gtgctgcgtatgccagtcgaccgacttcctcgaagggttcttttcgcacaaccacgtgaa
gggtggaagagatctagaggcggtcaaacaatgacttggcagcgaagtatgaaagccatt
accagcaaactcagctgtgctgctctgaaaggaatgttgtttactttcgcaactttactt
ccccaggttgtactacatgaagacaagaagtactaccccagcgccctcgaagtctatggc
cctgatgtggagacgctggtgcaagaagaagatgcgcaacctcttacacaacctctcgtg
gaaccagtcagacacaaaaagtttgcttatacagaagcgagcatcccaaggacaacatat
gatccggagttcttggctgatttgatggactgtccagatctgattcgaaacgttgtgcta
tgtggccatttgcaccacggcaagacctcattcgtcgactgtctgatggagcaaacacat
ccggatatttcggccaagggggataaagatcttcggtacactgactttctccacatggaa
gtcgaacgtggtttgagtgtgaagtcgacgcccgtcactttggtcctgcagaatatgcgt
gaaaaagcctacctgttcaatatctttgacacacccggccacgtgaacttttccgatgaa
gttaccgctgccttccgtttggctgatggtgtctgtctagttgtcgatgtcagcgagggt
gtgttgctcaacaccgaacgagttctcaaacacgccctgcaagagcgtctcccagttact
ctgtgtatcaacaaaatcgatcgcctaattttggaactgaagttacctcctacagacgct
tactacaaaatcaaacatatcattgatgaagtgaattcgattttgctcactttctcggag
acaacaggtgatatgggagactcgcagccactggtgagtcctctgctcgggaacgtgtgt
ttcgcaagctcgtactatcgcttctgcttcacactggactcgtttgcaaagctctacgcg
gacacatttgcccccgggatggatccggacgaattggctaaacgcctgtggggtgatatc
tacttcaactcgaaaagtcggaaattttcaaaacgtcctccagccaataattctcaacgc
acatttgtcgaattcatccttgaacccttgtacaaaatcttcgcccaaactgttggtgat
gtggacacgtgcctgccctctctgtgcacagagttgggtatttggttgagtaaatcggaa
atgaagatgaacgtccgtcccctgttgcgcatcatcttcaaacgatttttcggggacttt
tccggctttgtgcacatgtgcgttactcacatccccagtccggtatcagcagcccctgtc
aaggtatctagttgctacactggtccgttggatagtcagctggctcgcgatatgctcaag
tgcaatatggatgtgaagcaagtgatggtccacacgaccaagttgtatcccgatccagag
gcgatcacgtttcatgtatacggccgcgtcatgtctggcacgcttcatgctggacaagat
gtccgtgttttgggtgagaattactctctcactgacgaggaagactcgagacatgctact
gttggccgactctgggtgtcagtcgcaaggtatcggctagaagtcaaccgtgtgccggct
gggaattgggtcctcatcgaaggagtcgaccacccaatcgtgaaaaccgccaccctgact
tcgctggatgccaaaggcgcttgcattttcagaccgctcaatttcaatacattgtctgtg
gtgaaaattgcggtagaacctgccaacccatctgagctgcccaaactcttggacggttta
cgtaaggtcaacaaaagttatcctctcctggcaaccaaagttgaagaatcgggagagcga
attatccgaggtacaggcgaattgtacctagactgtgtgatgcacgacctgcggaagctc
tattccgacatagaggtaaaggtggccgatcccgtggtagctttttgtgagactgtggtt
gaaacatcctcgctaaaatgcttcgccgaaacgccgaacaaaaaaaacaaattgacaatg
attgccgagccattggataagggtttggctgaagatattgaaagcaaagcagttcagatt
gactggcccaaaaaaagactgggcgaatttttccagaagaaatacgattgggatctgttg
gcctcccgctctatttgggctttcggtccggatgccacagggccgaacatccttgttgac
gatacgttgccttcagaagtggataaaaccttgctcggaacggtgaaagactacattgtc
caaggtttccagtggggtacacgagaaggcccgctgtgtgatgaacctatcagaaatgta
aaattcaaaatgctggatgctctcatctccggtgaacctcatcaacgtgggtctggtcaa
atcatcccaacagcgcgtcgtgtcgcatactctgcatttctaatggccacacctcgtttg
atggagccatactacttcgtggaggttcaggctcccgcagattgcgtctcggctgtttac
accgtgcttgctcggcgtcgtggtcatgtgacccatgatgcccctatctctggctctcct
ctgtacgtgatccgtgcgttcttgccagtgatggactcgtttggtttcgagaccgatctg
cgtacgcattcacaagggcaggcattttgcttacttgtcttcaatcattggcaaatggtt
cccggagaccctctggatcgttccatccaaattcagccgttggtgcctcaaccggccacc
catcttgcccgcgaattcatgatcaaaactaggagacgcaaggtacttgtgcttgattga
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