Odocoileus virginianus (white-tailed deer): 110124498
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Entry
110124498 CDS
T10722
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110124498 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110124498 (SKIC3)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110124498 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_8
TPR_17
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_12
TPR_11
ANAPC3
TPR_9
ARM_TT21_C
Sel1
ARM_TT21_2nd
Fis1_TPR_C
ARM_TT21_5th
TPR_15
ChAPs
TPR_30
BTAD
Retrotran_gag_2
TPR_5
TPR_20
TPR_6
Vps39_1
Motif
Other DBs
NCBI-GeneID:
110124498
NCBI-ProteinID:
XP_070321932
UniProt:
A0ABM4I278
LinkDB
All DBs
Position
3:complement(89041690..89142083)
Genome browser
AA seq
1563 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYRKAAELEPDQLLAWQGLASLYEKCNHISAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHVEVARTWHKLIKTRQEEGADSQELHQLWRKLTQLLAECTEDQNNETQQ
LLLTAFENALGLSDKIPSEDHQVLYKHFIQCLSKFPNETARLKKACEGMINVYPTVQYPL
EVLCLHLIESGSLTDEGEQYCCRLVEMDPQSGAGLIGLGIKALQDKKYEDAVRYLTEGIK
ESPLCTAGWYHLAEAQVRVHKPKEAVLSCNQALKSIDNLDVSGGGLRQKNRCLRLKAEAL
IKLSDYESSEEAIRTLDQVSDANNIPGLLVLKGLAYLNKGSLDEASKIMEDLLSSYPDLT
EAHALEALIHFTKKDYLQAEKCFQRALEKDAEVAEYHYQLGLTYWSMGEETRKDKTKALT
HFLKAAKLDTYMGKVFCYLGHYYKDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEEMETALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQTLGKYKEAVAQYQLIIN
KKEDYVPALKGLGECHLLLAKAALVDYLDGKAVDYIEKALEYFTRALQHRADVSCLWKLA
GDACTSLSAVSPSKVNVSVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLADTGHNSDDLQELLEKSMHCLKKAVRLDSNNHLYWNALGVVSCYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANEKIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYRYNILQMN
AIPAAQVVLSKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDRDAYN
VTVRNYGRLLCSIGEYDKAIQAFKSTPLEDLEDIIGFALALFMKGVYKESSKAYERALAI
VESEQDKAHILTALAIAEYKQGKMDVAKTLLFKCSILKEPTVESLQALCALGLAMQDATL
SKAALNELLKHRKQNSDYQRSLLTSAIYALQGRSMAVQRQASRAVHSNPADPALWSLLSR
VVAQYTQRNAKGGAVAGNVAHILDSNHGKKALLYTAVNQLAMGSNSAEDEKNTALKTIQK
AALLSPGDPAVWAGLMVACHADDVLALVSRTQPKRVDLYLALLSAVSASIKDKGFYENYN
QSLERWSLSQAVTGLIDTGRISEAEALCTKNLKSNPDQPAVILLLRQVQCKPLLESRKPL
PDAVLEELQKTVMSNSTSVPAWQWLAHIHQSQGMMGAAEMCYRKSLQVASQQGSWGGKLS
SLLRLALLALEVCMANVSNDHWPSLVQEATAEALKLCFCPLAVLLQALLQFKRKMGARET
RRLLERVVYQPGYPKSIVSTARWYLLRHLHAKNDYELIDVLVNNAKTHGDARALELNQKL
SSQ
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtaaagactgctctgaaaagtgctagagatgcgatcagaaacaaa
gaatacaaggaagctttgaaacattgtaagacagtgttaaaacaagagaagaataactat
aatgcctgggtttttattggcgttgctgcagccgagctggaacagcctgatcaggcccag
ggtgcctacaggaaagctgctgaattagagccagaccagctgctagcttggcaggggtta
gcgagcttgtatgagaaatgcaaccacatcagtgctaaggatgacttgcctggagtttac
cagaagctcctggatctgtatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaactggtggatctgtattaccaagaaaagaaacacgtagaggtggcccggacatggcac
aaattgataaagacacgacaggaagaaggtgcagacagccaggagcttcatcagctgtgg
aggaagttgactcagttgctggctgagtgcactgaggatcagaataatgagacccagcaa
ctgcttttaactgcttttgagaatgcactgggcttatcagataagattcctagtgaagat
caccaagtgctttataaacatttcattcagtgtttatccaaatttcccaatgagactgct
aggttgaagaaagcctgtgaaggaatgataaacgtctatcccactgtacagtatccatta
gaagtgctttgtttacatttaattgaatcaggaagtcttactgacgagggagaacagtat
tgttgtagactagtggaaatggatccccaaagtggtgcaggtctcattggtttaggcatt
aaagcattacaagacaaaaagtacgaagatgctgttaggtacttaacagaagggataaag
gaaagccccctctgcacagctggatggtatcatctggcagaagcccaagtcagagtgcat
aaacctaaggaagctgttctttcatgcaatcaagctctgaagagtatagataacctcgat
gtatctggtggcgggctgcgtcagaagaatcgttgtcttcgtttgaaagcagaggctttg
attaaactctcagattatgaatcttcagaggaagcaattcgtactcttgatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaggcttggcctatctgaacaagggc
tcattagatgaagcttcaaagattatggaagaccttctgtcttcttaccctgacctcact
gaagctcatgccctggaggctttgattcattttaccaaaaaggactatctacaagcagaa
aaatgttttcagcgagctcttgagaaagatgctgaagttgctgaatatcattaccaactt
gggttaacatattggtccatgggtgaagaaacaagaaaagataaaacaaaggctcttacc
cactttttaaaggctgccaaactggatacatacatgggcaaagttttctgctatttaggt
cattattacaaagatgtagtgggtgataaaaatagggcccgtggatgttataggaaagct
tttgaattagatgacaccgatgctgaatctggagctgcagcagttgacttaagtgttgag
cttgaagagatggaaactgccttagctatcctgacaacagtcactcagaaggcaagtgct
gggacggcaaagtgggcctggcttaggcgaggcctatactatctgaaagctggtcagcat
tcccaagcagtggctgatttacaggcagcgttaagggcagaccccaaggacttcaattgt
tgggaatcattaggagaggcatacctaagcagaggtggctatacaacagccttgaaatcc
ttcacaaaagccagtgagctgaacccagagtccacgtacagtgtgtttaaggtggcggca
atacagcaaaccctgggcaaatataaagaggcggtagctcagtaccagctgatcattaac
aagaaagaagattatgtgcctgctctgaaaggtttgggtgaatgccacctcctattggca
aaagcagctcttgtcgattatcttgatgggaaagctgtagactacatagagaaagcactg
gaatattttactcgggctctgcaacatcgagctgatgtgtcttgcctttggaagctagct
ggggacgcttgtaccagtctgtctgctgtctcaccatctaaagtgaatgtcagtgtctta
ggagtccttctaggtcagaaggaaggaaaacaagtattaaagaaaaatgagctcctccat
cttggaggaagatgttacggtcgtgcattaaaactgatgtctacatctaatacgtggtgt
gaccttggaattaattattatcgccaagcacaacatctagcagacacaggccacaactca
gatgaccttcaagagttgttggagaaatctatgcattgtctgaaaaaagctgtgagactt
gacagtaataatcacttatactggaatgctcttggtgtagtttcatgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gcagttgcatggaccaacttgggagtgttataccttgcaaatgaaaaaattgagcaagct
catgaagctttcaaaatggctcaatcccttgatccatcttatttaatgtgctggattgga
caagctctaattgcagagacagttggaagttatgacaccatggatctcttcaggcacact
acagaactcagtatgcacactgagggagcaataggttatgcgtattgggtctgtacaaca
ctgcaagataagagcaacagagacacggagctgtaccggtataacatcctccagatgaac
gccattccagcagcacaagtggtcttgagcaaatacgtggagagaattcagaattatgct
ccagctttcacaatgttgggctacttaaatgaacatctgcaactgaagaaggaagcagca
aatgcgtaccaaagggcaattttgttgttacagactgcagaagaccgagatgcttataat
gttacagtaagaaattatggcagattgttatgttccattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaggatttagaagacatcataggtttcgcattagct
ttgtttatgaagggtgtgtacaaggagagcagcaaagcgtatgagagagccttggcaatt
gttgaatcagagcaagacaaagctcatatcctgacagctctggcaatagcggaatataaa
caaggaaaaatggatgtagccaagacattgctgttcaaatgctctatcttaaaggaacca
acagtggaaagccttcaagccctgtgtgctctgggattggcaatgcaggatgctacactg
tcaaaagctgcacttaacgagctactgaagcacagaaaacagaacagtgactatcagagg
agccttcttacttcagccatctatgccctgcaaggccgcagcatggcagtgcagagacaa
gcatccagagctgttcacagtaacccagctgatcctgctctttggtccctgttgtcccga
gtggttgcccagtatactcaacgaaatgcaaagggaggtgcagtggcaggaaacgtggct
catattctggactcaaatcatggaaagaaggcattactgtacactgcagtaaatcagttg
gctatgggaagcaattcagcagaagatgagaaaaatactgcactaaagaccattcagaag
gcagctctcctttctccaggtgatcctgccgtctgggctggactgatggtagcttgtcac
gccgatgatgtactggccctggtgagccgcactcagccaaagagggtggatttatacttg
gcactgttatctgctgtttctgcttcaattaaagacaaaggattctatgaaaattacaac
cagtctcttgaaaggtggtctctctctcaagctgtcactggtctaatagacacaggaaga
atatctgaagctgaagccctctgcacaaagaatttaaaaagtaaccctgatcaaccagct
gttatcttactcttgagacaagttcaatgtaaaccactcctggagtcacgaaaacctctc
ccagatgctgtacttgaagagctgcaaaaaacagtcatgtccaactcaacctctgttcca
gcttggcagtggctggcacacatacatcagtcccaggggatgatgggcgccgcagaaatg
tgctacaggaagagtctgcaagtagcctcccagcagggcagctggggcgggaagctctcg
agcctgttgcggctagcgctgctcgcgctggaagtctgcatggctaatgtttccaatgat
cactggccatccttggttcaagaagctacagctgaggccctgaaactttgcttttgtcca
ctggctgtccttttacaagctttgttacaattcaaacgcaaaatgggagcaagagagaca
cggcgacttttggagagagttgtatatcagcctgggtatcccaaatctattgtttcaaca
gcacgttggtaccttctgagacacttacatgccaaaaatgactacgagctcattgatgtg
ctggtaaacaatgccaaaactcacggagatgcaagagcattggaactgaatcagaaattg
tcctcacaataa
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integrated database retrieval system
